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[194267_x_at]

Description AV186248 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y55D9A.2B /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV186248 /WB_GENE_ID=Y55D9A.2B /WP=CE19236 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk497c4 : 5prime end, single read.
Cluster 6grp_total > 77      4grp_total > 07      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 116
(3)
A 		53.1
(-3)
A 		70.8
(-1.3)
A 		69.2
(-1.5)
A 		63
B 136.4
(3)
P 		49.1
(-3)
A 		98.3
(0.4)
A 		125.4
(2.2)
P 		87
C 108
(-0.5)
M 		32.6
(-3)
A 		87.7
(-1.2)
A 		215.2
(3)
P 		183
avr 120.1
(1.9) 		44.9
(-3) 		85.6
(-0.3) 		136.6
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 107
(-2.5)
A 		139.3
(-1.4)
A 		133.3
(-1.6)
P 		92.1
(-3)
A 		117
(-2.1)
A 		264.6
(3)
P 		173
B 88.8
(-2.7)
A 		82.6
(-3)
A 		94.3
(-2.4)
A 		110.5
(-1.5)
A 		176.2
(1.9)
M 		197.8
(3)
P 		115
C 88.7
(-3)
A 		105.6
(-2.1)
A 		123
(-1.2)
A 		143.6
(-0.1)
A 		138.8
(-0.4)
M 		203.7
(3)
P 		115
avr 94.8
(-3) 		109.2
(-2.3) 		116.9
(-2) 		115.4
(-2) 		144
(-0.7) 		222
(3) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 42.2
(3)
A 		11.5
(-2.7)
A 		18.5
(-1.4)
A 		10.1
(-3)
A 		32
B 43.5
(3)
P 		12.1
(-3)
A 		22.8
(-1)
A 		26.7
(-0.2)
P 		31
C 35.8
(2.9)
M 		9.4
(-3)
A 		30.6
(1.7)
A 		36.3
(3)
P 		27
avr 40.5
(3) 		11
(-3) 		24
(-0.4) 		24.4
(-0.3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 19.7
(-3)
A 		49.5
(1)
A 		29
(-1.8)
P 		23.4
(-2.5)
A 		35.3
(-0.9)
A 		64.4
(3)
P 		45
B 30.9
(-2.1)
A 		27.5
(-2.5)
A 		22.9
(-3)
A 		29.3
(-2.2)
A 		71.6
(2.7)
M 		73.8
(3)
P 		51
C 32.9
(-2.4)
A 		32.2
(-2.5)
A 		31.3
(-2.6)
A 		28.9
(-3)
A 		44.9
(-0.6)
M 		68.2
(3)
P 		39
avr 27.8
(-2.9) 		36.4
(-1.7) 		27.7
(-2.9) 		27.2
(-3) 		50.6
(0.4) 		68.8
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194267_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24778
Sequence Type Exemplar sequence
Representative Public ID AV186248 NCBI
Target Description AV186248 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y55D9A.2B /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV186248 /WB_GENE_ID=Y55D9A.2B /WP=CE19236 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk497c4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070013(9), NM_070014(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070013 NCBI Caenorhabditis elegans Y55D9A.2a (Y55D9A.2) mRNA, complete cds. 9/11 A 
NM_070014 NCBI Caenorhabditis elegans Y55D9A.2b (Y55D9A.2) mRNA, complete cds. 11/11 A 
SNAP00000027792 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12601587:12605275:-1 9/11 None
GENEFINDER00000027795 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12600745:12605284:-1 9/11 None
Y55D9A.2a ENSEMBL cdna:known chromosome:CEL140:IV:12601099:12605338:-1 gene:Y55D9A.2 9/11 A 
Y55D9A.2b ENSEMBL cdna:known chromosome:CEL140:IV:12601452:12605396:-1 gene:Y55D9A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12601468-12605297(-) 95.54 99.83
Public Domain and Genome References
Ensembl Y55D9A.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21702 Hypothetical protein Y55D9A.2a [Caenorhabditis elegans] ref|NP_502414.1| Y55D9A.2a [Caenorhabditis elegans] 0.0
blast CAA21703 Hypothetical protein Y55D9A.2b [Caenorhabditis elegans] ref|NP_502415.1| Y55D9A.2b [Caenorhabditis elegans] 0.0
blast CAE67916 Hypothetical protein CBG13513 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000467 EMBL-EBI D111/G-patch domain 2.3E-21
Pfam IPR000467 EMBL-EBI D111/G-patch domain 2.3E-21
Pfam IPR000467 EMBL-EBI D111/G-patch domain 2.3E-21
Sequence
Target Sequence 
>C. ELEGANS:194267_X_AT
gtattcgaccggatgatgtgctcagcgagccgataaggaaacgaccggccactggaccat
cagagatgaatattcatagatcagaagctccgggttcctcttctgatatgtatggatctt
gtgcagcaaagccaatgccagaaggtcagcgaaagtttgatcttccgtccacgtcagcgg
ctgtagcagcagcagcagcaccaaaacccctagattctggaaatgttggcttcaaacttc
tgaaatcaatgggttggagtgaaggtcaaggactcggaaaagagaaacaaggacacgtgg
aaccagtggcaactgaagtgaagaataatcggaagggattaggagccaatgagaaggagc
caccgacgaaaagttacaaggatcaagtgttggaaaagacgaaacagagatttaatgagg
tccggaaatgtgaaattattctgaaaaatttgtaatatttgctacccgctaaaaagggaa
cgatatccacagatcgtgttctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTCGACCGGATGATGTGCTCAG 191 453 1218 Antisense
GATAAGGAAACGACCGGCCACTGGA 419 419 1249 Antisense
CATAGATCAGAAGCTCCGGGTTCCT 652 209 1292 Antisense
CGGGTTCCTCTTCTGATATGTATGG 157 243 1308 Antisense
CAGCGAAAGTTTGATCTTCCGTCCA 229 101 1364 Antisense
TCCACGTCAGCGGCTGTAGCAGCAG 469 589 1385 Antisense
GTAGCAGCAGCAGCAGCACCAAAAC 376 457 1400 Antisense
GCACCAAAACCCCTAGATTCTGGAA 134 283 1415 Antisense
GGACACGTGGAACCAGTGGCAACTG 321 525 1508 Antisense
GTAATATTTGCTACCCGCTAAAAAG 132 461 1669 Antisense
CGATATCCACAGATCGTGTTCTCCC 126 249 1698 Antisense
Sequence Source Affymetrix Proprietary Database