[Home] | [Total List]

[194266_x_at]

Description CEK033E5R_rc /REP_DB=TREMBL Accession /GB=D33609 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 77      6grp_total > 68      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 639
1 2 3 4 range
A 1183
(2.1)
P 		1054.9
(-0.4)
P 		1225.6
(3)
P 		928.5
(-3)
P 		297
B 1122.4
(-1.1)
P 		1040.2
(-3)
P 		1306.7
(3)
P 		1134.2
(-0.9)
P 		267
C 1253.2
(0.9)
P 		839.1
(-3)
P 		1478.1
(3)
P 		1077.1
(-0.8)
P 		639
avr 1186.2
(0.5) 		978.1
(-3) 		1336.8
(3) 		1046.6
(-1.9) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 811
1 2 3 4 5 6 range
A 1472.8
(0.2)
P 		1586.7
(1.1)
P 		1058.6
(-3)
P 		1362.2
(-0.6)
P 		1497.1
(0.4)
P 		1830.3
(3)
P 		772
B 1182.7
(-2.1)
P 		1122.1
(-3)
P 		1182.2
(-2.1)
P 		1451.3
(1.8)
P 		1207
(-1.8)
P 		1537.7
(3)
P 		416
C 1418.8
(-1.1)
P 		1211.7
(-3)
P 		1517.1
(-0.2)
P 		1401.9
(-1.3)
P 		1394.4
(-1.3)
P 		1869.6
(3)
P 		658
avr 1358.1
(-1.7) 		1306.8
(-2.3) 		1252.6
(-3) 		1405.1
(-1.1) 		1366.2
(-1.6) 		1745.9
(3) 		493
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 379
1 2 3 4 range
A 430.7
(3)
P 		229
(-1.1)
P 		320.4
(0.8)
P 		135.9
(-3)
P 		295
B 357.9
(3)
P 		256.9
(-2.2)
P 		302.8
(0.2)
P 		241.7
(-3)
P 		116
C 414.9
(1.2)
P 		241.3
(-1.9)
P 		515.2
(3)
P 		181.6
(-3)
P 		334
avr 401.2
(3) 		242.4
(-1.4) 		379.5
(2.4) 		186.4
(-3) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 271.5
(-2.3)
P 		564.3
(3)
P 		230.5
(-3)
P 		345.5
(-0.9)
P 		451.8
(1)
P 		445.6
(0.9)
P 		334
B 411.5
(-0.4)
P 		373.5
(-1.2)
P 		287.1
(-3)
P 		384.4
(-1)
P 		490.4
(1.3)
P 		573.4
(3)
P 		286
C 525.9
(1.3)
P 		369.7
(-1.5)
P 		386.1
(-1.2)
P 		281.9
(-3)
P 		451.2
(-0)
P 		625.9
(3)
P 		344
avr 403
(-0.5) 		435.8
(0.3) 		301.2
(-3) 		337.3
(-2.1) 		464.5
(1) 		548.3
(3) 		247
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194266_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20948
Sequence Type Exemplar sequence
Representative Public ID CEK033E5R NCBI
Target Description CEK033E5R_rc /REP_DB=TREMBL Accession /GB=D33609 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065658 NCBI Caenorhabditis elegans C27F2.8 (C27F2.8) mRNA, complete cds. 11/11 A 
C27F2.8 ENSEMBL cdna:known chromosome:CEL140:III:4991409:4997703:-1 gene:C27F2.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001018 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4991427-4991878(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27F2.8
Entrez Gene 175677 Entrez gene
WormBase CE39000 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597141_AT similar to RW1 protein cfa
CANINE_2:CFAAFFX.4415.1.S1_AT similar to RW1 protein cfa
DROSOPHILA_2:1629053_AT dm
DROSGENOME1:141227_AT dm
CHICKEN:GGA.12674.2.A1_A_AT RW1 protein gga
CHICKEN:GGA.12674.2.A1_AT RW1 protein gga
CHICKEN:GGA.12674.3.S1_A_AT RW1 protein gga
CHICKEN:GGA.17653.1.S1_S_AT RW1 protein gga
CHICKEN:GGAAFFX.25052.1.S1_S_AT RW1 protein gga
CHICKEN:GGA.12674.3.A1_A_AT RW1 protein gga
HG-U133A:212507_AT RW1 protein hs
HG-U133A_2:212507_AT RW1 protein hs
HG-U133_PLUS_2:212507_AT RW1 protein hs
HUGENEFL:D87446_AT RW1 protein hs
U133_X3P:HS.75912.0.A1_3P_AT RW1 protein hs
U133_X3P:HS.160792.0.A1_3P_AT RW1 protein hs
HG-U133_PLUS_2:235972_AT RW1 protein hs
HG-U133B:235972_AT RW1 protein hs
HG-U95AV2:36971_AT RW1 protein hs
HG-U95D:91638_AT RW1 protein hs
MG-U74AV2:102336_AT DNA segment, Chr 1, Brigham & Women's Genetics 0491 expressed mm
MOE430A:1448396_AT DNA segment, Chr 1, Brigham & Women's Genetics 0491 expressed mm
MOUSE430A_2:1448396_AT DNA segment, Chr 1, Brigham & Women's Genetics 0491 expressed mm
MOUSE430_2:1448396_AT DNA segment, Chr 1, Brigham & Women's Genetics 0491 expressed mm
MOE430B:1457822_AT DNA segment, Chr 1, Brigham & Women's Genetics 0491 expressed (D1Bwg0491e), mRNA mm
MOUSE430_2:1457822_AT DNA segment, Chr 1, Brigham & Women's Genetics 0491 expressed (D1Bwg0491e), mRNA mm
MU19KSUBA:TC17033_AT DNA segment, Chr 1, Brigham & Women's Genetics 0491 expressed (D1Bwg0491e), mRNA mm
MU19KSUBB:TC26047_AT DNA segment, Chr 1, Brigham & Women's Genetics 0491 expressed (D1Bwg0491e), mRNA mm
MU19KSUBC:TC39208_AT DNA segment, Chr 1, Brigham & Women's Genetics 0491 expressed (D1Bwg0491e), mRNA mm
RAE230B:1394864_AT similar to RW1 protein (predicted) rn
RAT230_2:1394864_AT similar to RW1 protein (predicted) rn
RAE230A:1372554_AT Similar to RW1 protein (predicted) rn
RAT230_2:1372554_AT Similar to RW1 protein (predicted) rn
RAE230B:1390963_AT Similar to RW1 protein (predicted) rn
RAT230_2:1390963_AT Similar to RW1 protein (predicted) rn
RAE230B:1396447_AT Similar to RW1 protein (predicted) rn
RAT230_2:1396447_AT Similar to RW1 protein (predicted) rn
RG-U34B:RC_AA943110_AT Similar to RW1 protein (predicted) rn
RG-U34B:RC_AA997034_AT Similar to RW1 protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_498059 C27F2.8 [Caenorhabditis elegans] gb|AAA81429.2| Hypothetical protein C27F2.8 [Caenorhabditis elegans] 0.0
blast CAE70089 Hypothetical protein CBG16531 [Caenorhabditis briggsae] 0.0
blast XP_371542 PREDICTED: RW1 protein [Homo sapiens] 1.0E-107
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498059.1 2 1054-1076,1143-1165
C27F2.8 2 1054-1076,1143-1165
Sequence
Target Sequence 
>C. ELEGANS:194266_X_AT
aaattcggatccatggggcacaaatacggtgtcaaatccactttctgaactagaggatga
tccattgtcactttcacatttaggaatcaatctggcttcaaccgaatcatctgcaacagg
cccaatgttcacaatgttcagtggtccagaattcaatttatggtcgtcaagttcactctt
ccatcccccaacacaacaaccatcaacttctcaaatgccacaagatacggacaacgagaa
tgatgaaaagaataactaataatctcattctcaaacagatttcccatattatatctactt
atctgctatccaaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCGGATCCATGGGGCACAAAT 179 111 41 Antisense
ACGGTGTCAAATCCACTTTCTGAAC 57 97 66 Antisense
GGATGATCCATTGTCACTTTCACAT 340 513 95 Antisense
GAATCAATCTGGCTTCAACCGAATC 281 327 124 Antisense
AACCGAATCATCTGCAACAGGCCCA 314 147 140 Antisense
ACAGGCCCAATGTTCACAATGTTCA 134 107 156 Antisense
TATGGTCGTCAAGTTCACTCTTCCA 491 655 199 Antisense
CACAACAACCATCAACTTCTCAAAT 110 195 232 Antisense
AATCTCATTCTCAAACAGATTTCCC 93 171 301 Antisense
GATTTCCCATATTATATCTACTTAT 683 427 318 Antisense
ATCTACTTATCTGCTATCCAAATCT 20 33 333 Antisense
Sequence Source Affymetrix Proprietary Database