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[194265_x_at]

Description AV183362_rc /REP_DB=TREMBL Accession /GB=AV183362 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk650d7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 82      6grp_total > 38      4grp_total > 29      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 340.4
(1.8)
P 		255.6
(-3)
P 		266.7
(-2.4)
P 		361.2
(3)
P 		106
B 382
(1.8)
P 		398.2
(2.4)
P 		257
(-3)
P 		413.1
(3)
P 		156
C 464.5
(3)
P 		350.3
(-0.7)
P 		281.4
(-3)
P 		355
(-0.6)
P 		183
avr 395.6
(3) 		334.7
(0.1) 		268.4
(-3) 		376.4
(2.1) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 448.7
(3)
P 		326.3
(0.1)
P 		259.4
(-1.5)
P 		196.5
(-3)
P 		405.2
(2)
P 		382.1
(1.4)
P 		252
B 601
(3)
P 		419.8
(-0.5)
P 		326.3
(-2.2)
P 		286.6
(-3)
P 		426.7
(-0.3)
P 		528.5
(1.6)
P 		314
C 529.8
(3)
P 		418.4
(1)
P 		192.7
(-3)
P 		231.4
(-2.3)
P 		355
(-0.1)
P 		423.3
(1.1)
P 		337
avr 526.5
(3) 		388.2
(0.1) 		259.5
(-2.6) 		238.2
(-3) 		395.6
(0.3) 		444.6
(1.3) 		288
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 123.9
(3)
P 		55.5
(-2.8)
P 		69.7
(-1.6)
P 		52.9
(-3)
P 		71
B 121.8
(3)
P 		98.4
(0.7)
P 		59.6
(-3)
P 		88
(-0.3)
P 		62
C 153.8
(3)
P 		100.7
(-0.4)
P 		98.1
(-0.6)
P 		59.9
(-3)
P 		94
avr 133.2
(3) 		84.9
(-1.4) 		75.8
(-2.2) 		66.9
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 82.7
(-0.3)
P 		116
(2.5)
P 		56.5
(-2.4)
P 		49.8
(-3)
P 		122.3
(3)
P 		93
(0.6)
P 		73
B 209.1
(3)
P 		139.7
(-0.1)
P 		79.2
(-2.9)
P 		75.9
(-3)
P 		173.4
(1.4)
P 		197.1
(2.5)
P 		133
C 196.4
(3)
P 		127.7
(0.3)
P 		49
(-2.9)
P 		46.5
(-3)
P 		114.9
(-0.3)
P 		141.7
(0.8)
P 		150
avr 162.7
(3) 		127.8
(1) 		61.6
(-2.8) 		57.4
(-3) 		136.9
(1.5) 		143.9
(1.9) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194265_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20575
Sequence Type Exemplar sequence
Representative Public ID AV183362 NCBI
Target Description AV183362_rc /REP_DB=TREMBL Accession /GB=AV183362 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk650d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064410 NCBI Caenorhabditis elegans Y48C3A.4 (Y48C3A.4) mRNA, complete cds. 11/11 None
Y48C3A.4 ENSEMBL cdna:known chromosome:CEL140:II:13279668:13285713:-1 gene:Y48C3A.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13279736-13280018(-) 84.4 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48C3A.4
Entrez Gene 174971 Entrez gene
SwissProt Q9NAG7 EMBL-EBI
WormBase CE22135 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55101 Hypothetical protein Y48C3A.4 [Caenorhabditis elegans] ref|NP_496811.1| Y48C3A.4 [Caenorhabditis elegans] 0.0
blast CAE73368 Hypothetical protein CBG20804 [Caenorhabditis briggsae] 1.0E-125
Sequence
Target Sequence 
>C. ELEGANS:194265_X_AT
tgattttttttttcacacgctctacccaccttctttcgtttgctattcaattgcattttt
tttctgtgacccaaatttttttcctcagttttttctttctcctcctctactaaagtttta
gactacaaaaagccacgcgagtaacgggtagatatttcgcaacaatttccgcttttcccg
ccaaaatgactctttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTTTTTTTTTCACACGCTCTAC 632 563 44 Antisense
ACCTTCTTTCGTTTGCTATTCAATT 209 87 71 Antisense
TTTCGTTTGCTATTCAATTGCATTT 410 671 77 Antisense
AATTGCATTTTTTTTCTGTGACCCA 332 177 92 Antisense
CTGTGACCCAAATTTTTTTCCTCAG 708 239 107 Antisense
TTCTCCTCCTCTACTAAAGTTTTAG 420 693 140 Antisense
TTTAGACTACAAAAAGCCACGCGAG 415 671 160 Antisense
AAAGCCACGCGAGTAACGGGTAGAT 694 123 172 Antisense
GTAACGGGTAGATATTTCGCAACAA 580 1 184 Antisense
TATTTCGCAACAATTTCCGCTTTTC 137 663 196 Antisense
TTCCCGCCAAAATGACTCTTTCAAA 642 693 218 Antisense
Sequence Source Affymetrix Proprietary Database