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[194264_x_at]

Description CEK012BYR_rc /REP_DB=TREMBL Accession /GB=D27519 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk12b11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 43      4grp_high_8_8 > 40      6grp_highest_nonorm > 61      6grp_total > 24      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 477.7
(3)
P 		265.4
(-3)
P 		373.6
(0.1)
P 		293.7
(-2.2)
P 		212
B 480.2
(3)
P 		311.7
(-2.3)
P 		290.5
(-3)
P 		319.9
(-2.1)
P 		190
C 485.6
(3)
P 		319.4
(-1.1)
P 		326.4
(-0.9)
P 		242.1
(-3)
P 		244
avr 481.2
(3) 		298.8
(-2.6) 		330.2
(-1.6) 		285.2
(-3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 448
(3)
P 		430.7
(2.4)
P 		373.1
(0.3)
P 		284.1
(-3)
P 		429.4
(2.3)
P 		315.1
(-1.9)
P 		164
B 533.1
(3)
P 		443.3
(0.1)
P 		452.8
(0.4)
P 		423.4
(-0.6)
P 		350.4
(-3)
P 		357.6
(-2.8)
P 		183
C 434.6
(2.6)
P 		403.5
(1.4)
P 		384.7
(0.8)
P 		447
(3)
P 		280.3
(-3)
P 		387.3
(0.9)
P 		167
avr 471.9
(3) 		425.8
(0.7) 		403.5
(-0.5) 		384.8
(-1.4) 		353.4
(-3) 		353.3
(-3) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 173.9
(3)
P 		57.6
(-2.3)
P 		97.7
(-0.5)
P 		43
(-3)
P 		131
B 153.1
(3)
P 		77
(-2.3)
P 		67.3
(-3)
P 		68.2
(-2.9)
P 		86
C 160.7
(3)
P 		91.8
(-0.4)
P 		113.8
(0.7)
P 		40.8
(-3)
P 		120
avr 162.6
(3) 		75.5
(-1.7) 		92.9
(-0.7) 		50.7
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 82.6
(-2.2)
P 		153.2
(3)
P 		81.3
(-2.3)
P 		72
(-3)
P 		129.6
(1.3)
P 		76.7
(-2.7)
P 		81
B 185.5
(3)
P 		147.6
(-0)
P 		110
(-3)
P 		112.1
(-2.8)
P 		142.3
(-0.4)
P 		133.4
(-1.1)
P 		76
C 161.1
(3)
P 		123.1
(-0.2)
P 		97.9
(-2.3)
P 		89.9
(-3)
P 		90.7
(-2.9)
P 		129.6
(0.3)
P 		71
avr 143.1
(3) 		141.3
(2.8) 		96.4
(-2.4) 		91.3
(-3) 		120.9
(0.4) 		113.2
(-0.5) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194264_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22316
Sequence Type Exemplar sequence
Representative Public ID CEK012BYR NCBI
Target Description CEK012BYR_rc /REP_DB=TREMBL Accession /GB=D27519 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk12b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029561(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029561 NCBI Caenorhabditis elegans H01A20.2 (H01A20.2) mRNA, complete cds. 11/11 None
H01A20.2 ENSEMBL cdna:known chromosome:CEL140:X:14568794:14570342:-1 gene:H01A20.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013677 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013679 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14568803-14569207(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H01A20.2
Entrez Gene 3564938 Entrez gene
SwissProt Q7YWZ6 EMBL-EBI
WormBase CE34899 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17853 Hypothetical protein H01A20.2 [Caenorhabditis elegans] ref|NP_001024732.1| H01A20.2 [Caenorhabditis elegans] 1.0E-100
blast CAE63198 Hypothetical protein CBG07553 [Caenorhabditis briggsae] 1.0E-63
Sequence
Target Sequence 
>C. ELEGANS:194264_X_AT
aactaaaagccaccattgacgacgaaattattgctcacttgggagcatttgcaaaagacg
atgtgatcacggaaaatcgtctccgactggcggttcttgttcacgactcttgcatccaga
ttgtcgacaaaaagaagaagaaaccacttcgcatgaaaatccaagctatgaccattgagc
aggatgaagattgatttattattaatattgttattattggatattgaaaatatcgtaatt
gaacttaactatgtaattgcttttctactttctttccttttcatttgtttttctttccca
tgattcagttgtgatccacattttgtcagttgacacgtgacttttccgtctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTAAAAGCCACCATTGACGACGA 433 137 16 Antisense
TATTGCTCACTTGGGAGCATTTGCA 130 665 44 Antisense
CACGGAAAATCGTCTCCGACTGGCG 328 197 83 Antisense
GACTCTTGCATCCAGATTGTCGACA 574 373 120 Antisense
GAAACCACTTCGCATGAAAATCCAA 614 357 155 Antisense
ATCCAAGCTATGACCATTGAGCAGG 227 39 174 Antisense
TGTAATTGCTTTTCTACTTTCTTTC 562 559 267 Antisense
TTTTCATTTGTTTTTCTTTCCCATG 539 675 293 Antisense
TTCCCATGATTCAGTTGTGATCCAC 566 697 310 Antisense
GTGATCCACATTTTGTCAGTTGACA 130 485 326 Antisense
AGTTGACACGTGACTTTTCCGTCTT 628 63 343 Antisense
Sequence Source Affymetrix Proprietary Database