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[194262_x_at]

Description CEK029BZR_rc /REP_DB=TREMBL Accession /GB=D33313 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk29b12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 12      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 61      6grp_total > 22      4grp_total > 23      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 686.5
(3)
P 		345.1
(-3)
P 		385.1
(-2.3)
P 		620
(1.8)
P 		341
B 661.8
(3)
P 		368.9
(-2.6)
P 		346.6
(-3)
P 		603.6
(1.9)
P 		315
C 644.4
(3)
P 		395.1
(-3)
P 		416.9
(-2.5)
P 		579
(1.4)
P 		249
avr 664.2
(3) 		369.7
(-3) 		382.9
(-2.7) 		600.9
(1.7) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 512.1
(2.1)
P 		535.3
(3)
P 		477.8
(0.8)
P 		460
(0.1)
P 		486.6
(1.1)
P 		377.7
(-3)
P 		158
B 576.6
(2.7)
P 		571.5
(2.5)
P 		586.9
(3)
P 		500.8
(0.2)
P 		403.3
(-2.9)
P 		400.5
(-3)
P 		186
C 450.8
(0.9)
P 		471.4
(1.7)
P 		502.5
(3)
P 		473.2
(1.8)
P 		356.5
(-3)
P 		426
(-0.1)
P 		146
avr 513.2
(2.4) 		526.1
(3) 		522.4
(2.8) 		478
(0.7) 		415.5
(-2.3) 		401.4
(-3) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 250
(3)
P 		74.9
(-3)
P 		100.7
(-2.1)
P 		90.8
(-2.5)
P 		175
B 211
(3)
P 		91.1
(-2.5)
P 		80.3
(-3)
P 		128.6
(-0.8)
P 		131
C 213.3
(3)
P 		113.6
(-2.2)
P 		145.3
(-0.5)
P 		97.6
(-3)
P 		116
avr 224.8
(3) 		93.2
(-3) 		108.8
(-2.3) 		105.7
(-2.4) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 94.4
(-2.8)
P 		190.4
(3)
P 		104.1
(-2.3)
P 		116.7
(-1.5)
P 		146.8
(0.3)
P 		91.9
(-3)
P 		99
B 200.6
(3)
P 		190.2
(2.1)
P 		142.5
(-2.1)
P 		132.6
(-3)
P 		163.9
(-0.2)
P 		149.3
(-1.5)
P 		68
C 167.1
(3)
P 		143.8
(1.1)
P 		127.9
(-0.3)
P 		95.2
(-3)
P 		115.4
(-1.3)
P 		142.6
(1)
P 		72
avr 154
(0.9) 		174.8
(3) 		124.8
(-2) 		114.8
(-3) 		142
(-0.3) 		127.9
(-1.7) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194262_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22169
Sequence Type Exemplar sequence
Representative Public ID CEK029BZR NCBI
Target Description CEK029BZR_rc /REP_DB=TREMBL Accession /GB=D33313 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk29b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076648 NCBI Caenorhabditis elegans W05H9.2 (W05H9.2) mRNA, complete cds. 11/11 None
W05H9.2 ENSEMBL cdna:known chromosome:CEL140:X:6267006:6271008:1 gene:W05H9.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6270681-6270998(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05H9.2
Entrez Gene 180899 Entrez gene
SwissProt Q23178 EMBL-EBI
WormBase CE33720 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91681 Hypothetical protein W05H9.2 [Caenorhabditis elegans] ref|NP_509049.3| W05H9.2 [Caenorhabditis elegans] 0.0
blast T26204 hypothetical protein W05H9.2 - Caenorhabditis elegans 0.0
blast AAO91682 Hypothetical protein W05H9.4 [Caenorhabditis elegans] ref|NP_001024943.1| W05H9.4 [Caenorhabditis elegans] 5.0E-73
Sequence
Target Sequence 
>C. ELEGANS:194262_X_AT
aatctcatcacaacgtatttcatgctcaaaaaatttaccataattccccacgaaatttgt
agacgtataattttatcggataccacatttccaaactcatcatacacccccatcttcaaa
tgtgtctaattttatattgtccggttaggcttattgaaaccaaagacctagtgagctttt
tattatcatttcctcttttgttccatactctttcccattgtttcatgacaacatccattg
gtcaacgttccaaagtgtttggcgcactgaagtacgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTCATCACAACGTATTTCATGC 377 169 14 Antisense
TTACCATAATTCCCCACGAAATTTG 140 681 48 Antisense
GGATACCACATTTCCAAACTCATCA 243 511 91 Antisense
CATACACCCCCATCTTCAAATGTGT 575 213 114 Antisense
ACCCCCATCTTCAAATGTGTCTAAT 468 89 119 Antisense
TATATTGTCCGGTTAGGCTTATTGA 326 661 146 Antisense
AAGACCTAGTGAGCTTTTTATTATC 22 155 176 Antisense
TATTATCATTTCCTCTTTTGTTCCA 505 663 194 Antisense
CATACTCTTTCCCATTGTTTCATGA 647 213 217 Antisense
GACAACATCCATTGGTCAACGTTCC 412 365 240 Antisense
GTGTTTGGCGCACTGAAGTACGATT 271 485 268 Antisense
Sequence Source Affymetrix Proprietary Database