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[194260_x_at]

Description CEK025B6R_rc /REP_DB=TREMBL Accession /GB=D33030 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25b6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_high_8_8 > 51      6grp_highest_nonorm > 51      6grp_total > 04      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 784
1 2 3 4 range
A 671.5
(1.6)
P 		855
(3)
P 		505.7
(0.3)
P 		71
(-3)
P 		784
B 600.5
(1.7)
P 		748.6
(3)
P 		594.4
(1.6)
P 		87.3
(-3)
P 		661
C 673.3
(2.8)
P 		691.6
(3)
P 		566.7
(1.8)
P 		72.2
(-3)
A 		619
avr 648.4
(2) 		765.1
(3) 		555.6
(1.2) 		76.8
(-3) 		688

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 705
1 2 3 4 5 6 range
A 750.6
(3)
P 		717.5
(2.6)
P 		407
(-1.6)
P 		381.9
(-1.9)
P 		441.7
(-1.1)
P 		303.4
(-3)
P 		447
B 816.3
(3)
P 		584.4
(0.8)
P 		572.6
(0.7)
P 		545.5
(0.5)
P 		356.9
(-1.3)
P 		173.8
(-3)
P 		643
C 798.9
(3)
P 		522.6
(0.6)
P 		651.4
(1.7)
P 		491.7
(0.3)
P 		527.4
(0.6)
P 		111.2
(-3)
P 		688
avr 788.6
(3) 		608.2
(1.2) 		543.7
(0.5) 		473
(-0.2) 		442
(-0.5) 		196.1
(-3) 		593
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 244.5
(3)
P 		185.6
(1.5)
P 		132.2
(0.1)
P 		10.4
(-3)
P 		234
B 191.5
(3)
P 		184.9
(2.8)
P 		137.7
(1.1)
P 		18.6
(-3)
P 		173
C 222.9
(3)
P 		198.8
(2.3)
P 		197.5
(2.3)
P 		12.2
(-3)
A 		211
avr 219.6
(3) 		189.8
(2.1) 		155.8
(1.1) 		13.7
(-3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 138.4
(-0.9)
P 		255.2
(3)
P 		88.6
(-2.5)
P 		96.9
(-2.2)
P 		133.3
(-1)
P 		73.9
(-3)
P 		181
B 284
(3)
P 		194.5
(0.6)
P 		139.1
(-1)
P 		144.5
(-0.8)
P 		145
(-0.8)
P 		64.8
(-3)
P 		219
C 296.1
(3)
P 		159.5
(-0.2)
P 		165.8
(-0)
P 		98.9
(-1.6)
P 		170.7
(0.1)
P 		37.2
(-3)
P 		259
avr 239.5
(3) 		203.1
(1.8) 		131.2
(-0.6) 		113.4
(-1.2) 		149.7
(0) 		58.6
(-3) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194260_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20115
Sequence Type Exemplar sequence
Representative Public ID CEK025B6R NCBI
Target Description CEK025B6R_rc /REP_DB=TREMBL Accession /GB=D33030 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25b6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026647 NCBI Caenorhabditis elegans Y71G12B.11b (Y71G12B.11) mRNA, complete cds. 11/11 None
Y71G12B.11b ENSEMBL cdna:known chromosome:CEL140:I:1721598:1733029:1 gene:Y71G12B.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058485 3/11 Cross Hyb Matching Probes A 
GENEFINDER00000001829 3/11 Cross Hyb Matching Probes None
SNAP00000001788 3/11 Cross Hyb Matching Probes None
Y71G12B.11a 3/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171736 2 1 NM_001026647 194260_x_at (11)
NM_058485 176329_at (11), 176650_s_at (11), 176656_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1731451-1733000(+) 96.98 100.0
Public Domain and Genome References
Ensembl Y71G12B.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73910 Hypothetical protein Y71G12B.11b [Caenorhabditis elegans] ref|NP_001021818.1| Y71G12B.11b [Caenorhabditis elegans] 0.0
blast AAK73909 Hypothetical protein Y71G12B.11a [Caenorhabditis elegans] ref|NP_490886.2| Y71G12B.11a [Caenorhabditis elegans] gb|AAA74747.1| talin 0.0
blast CAE74421 Hypothetical protein CBG22153 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000299 EMBL-EBI Band 4.1 9.1E-36
Sequence
Target Sequence 
>C. ELEGANS:194260_X_AT
tggagcaggctgccaaacagaccgcttatgatgcaacacagacgatatcggcggccaatt
cagcaaagaagaagcagcaagagcacaagcgcaccgagaccactgaacagcttctagtcg
atgattcgcacacgattttacgcattcgttaaatttgaatatatattcttatacatattc
tttcgccccggttttctagaatcttctagaaaacattcaaaatttcatatcttcttgccc
ttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCAGGCTGCCAAACAGACCGC 6 549 68 Antisense
CAGACCGCTTATGATGCAACACAGA 526 205 85 Antisense
GCAACACAGACGATATCGGCGGCCA 166 319 100 Antisense
TATCGGCGGCCAATTCAGCAAAGAA 592 653 113 Antisense
AAGCAGCAAGAGCACAAGCGCACCG 226 151 139 Antisense
CACCGAGACCACTGAACAGCTTCTA 600 199 159 Antisense
AACAGCTTCTAGTCGATGATTCGCA 232 137 173 Antisense
GATTCGCACACGATTTTACGCATTC 404 433 190 Antisense
ATTCTTATACATATTCTTTCGCCCC 383 11 232 Antisense
GCCCCGGTTTTCTAGAATCTTCTAG 679 283 252 Antisense
AAAATTTCATATCTTCTTGCCCTTT 605 133 286 Antisense
Sequence Source Affymetrix Proprietary Database