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[194259_x_at]

Description CEC0831 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K06A9.1B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C09083 /WB_GENE_ID=K06A9.1B /WP=CE19525 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk156b12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 60      6grp_total > 05      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 585
(3)
P 		236.5
(-3)
P 		315.2
(-1.6)
P 		302.3
(-1.9)
P 		349
B 587.1
(3)
P 		336.2
(-1.3)
P 		276.9
(-2.3)
P 		234.5
(-3)
P 		353
C 498.9
(3)
P 		379.3
(0)
P 		342.4
(-0.9)
P 		257.6
(-3)
P 		241
avr 557
(3) 		317.3
(-1.9) 		311.5
(-2) 		264.8
(-3) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 541
1 2 3 4 5 6 range
A 543.7
(3)
P 		435.4
(1)
P 		212.8
(-3)
P 		244
(-2.4)
P 		390.9
(0.2)
P 		291.5
(-1.6)
P 		331
B 493.3
(2.2)
P 		539.7
(3)
P 		321.2
(-0.9)
P 		238.8
(-2.4)
P 		259
(-2)
P 		203.7
(-3)
P 		336
C 718.8
(3)
P 		480.7
(0.4)
P 		349.9
(-1.1)
P 		177.6
(-3)
P 		408.7
(-0.4)
P 		197.9
(-2.8)
P 		541
avr 585.3
(3) 		485.3
(1.4) 		294.6
(-1.8) 		220.1
(-3) 		352.9
(-0.8) 		231
(-2.8) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 213
(3)
P 		51.3
(-2.7)
P 		82.4
(-1.6)
P 		44.2
(-3)
P 		169
B 187.2
(3)
P 		83
(-1.6)
P 		64.2
(-2.4)
P 		50
(-3)
P 		137
C 165.2
(3)
P 		109.1
(0.2)
P 		119.3
(0.7)
P 		43.4
(-3)
P 		122
avr 188.5
(3) 		81.1
(-1.5) 		88.6
(-1.2) 		45.9
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 100.2
(-0)
P 		154.9
(3)
P 		46.3
(-3)
P 		61.9
(-2.1)
P 		118
(1)
P 		71
(-1.6)
P 		109
B 171.6
(2.6)
P 		179.7
(3)
P 		78
(-2.2)
P 		63.3
(-3)
P 		105.2
(-0.8)
P 		75.9
(-2.4)
P 		116
C 266.4
(3)
P 		146.7
(-0.1)
P 		89
(-1.6)
P 		35.7
(-3)
P 		132.3
(-0.5)
P 		66.3
(-2.2)
P 		231
avr 179.4
(3) 		160.4
(2.1) 		71.1
(-2.2) 		53.6
(-3) 		118.5
(0.1) 		71.1
(-2.2) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194259_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26166
Sequence Type Exemplar sequence
Representative Public ID CEC0831 NCBI
Target Description CEC0831 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K06A9.1B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C09083 /WB_GENE_ID=K06A9.1B /WP=CE19525 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk156b12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029593, NM_075892, NM_075891
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075891 NCBI Caenorhabditis elegans K06A9.1b (K06A9.1) mRNA, complete cds. A 
NM_075892 NCBI Caenorhabditis elegans K06A9.1a (K06A9.1) mRNA, complete cds. A 
K06A9.1b ENSEMBL cdna:known chromosome:CEL140:X:1547504:1560119:1 gene:K06A9.1 A 
NM_001029593 NCBI Caenorhabditis elegans K06A9.1c (K06A9.1) mRNA, complete cds. None
K06A9.1a ENSEMBL cdna:known chromosome:CEL140:X:1547504:1559723:1 gene:K06A9.1 A 
GENEFINDER00000039861 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1557259:1559872:1 None
K06A9.1c ENSEMBL cdna:known chromosome:CEL140:X:1549442:1559723:1 gene:K06A9.1 A 
SNAP00000039855 ENSEMBL cdna:SNAP chromosome:CEL140:X:1558440:1561317:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1547504-1559724(+) 100.0 100.0
Public Domain and Genome References
Ensembl K06A9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC70890 Hypothetical protein K06A9.1b [Caenorhabditis elegans] ref|NP_508292.1| K06A9.1b [Caenorhabditis elegans] 1.0E-106
blast AAP82647 Hypothetical protein K06A9.1c [Caenorhabditis elegans] ref|NP_001024764.1| K06A9.1c [Caenorhabditis elegans] 1.0E-101
blast AAC70889 Hypothetical protein K06A9.1a [Caenorhabditis elegans] ref|NP_508293.1| K06A9.1a [Caenorhabditis elegans] 1.0E-101
blast AAP82647 Hypothetical protein K06A9.1c [Caenorhabditis elegans] ref|NP_001024764.1| K06A9.1c [Caenorhabditis elegans] 1.0E-100
blast AAC70889 Hypothetical protein K06A9.1a [Caenorhabditis elegans] ref|NP_508293.1| K06A9.1a [Caenorhabditis elegans] 1.0E-100
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508292.1 1 7-29
NP_508293.1 1 7-29
K06A9.1b 1 7-29
K06A9.1a 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:194259_X_AT
gttcaagaggttcatcactcgccacaacttccgcgccaagacccagtgtgacttgtctgt
tcatgtacgatacacaatccaaagaaatagatcaaacagctataaacacgtataaaactg
atttcaatttcgctctactggttgcttccaaattgaacaatgaatcaattttgactggat
acatcgataacttcggatacagtgctgggttgaatgatcatcaatattaccctactgacg
actacaatggtattaagtctgtacctttcccaattgatggcactgatgacgacattgatc
ttgatttgaaagaggtcgacaaaagtttggcaacagcagattggacaccaccagtggctg
accaaacctgcatgattttcatttctgctgcgccagaagatgagtatgggggcactacta
taaaatcgacttatacttacttcgagacagtcgttggagttcttgttggaggagctaaaa
gtataccgggactttcaattgacaaaaatatagttatcacgaacaatacaatgaacgacc
gtgacgctagtgcagttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAAGAGGTTCATCACTCGCCAC 676 445 6118 Antisense
GACCCAGTGTGACTTGTCTGTTCAT 11 383 6157 Antisense
AACTGATTTCAATTTCGCTCTACTG 297 143 6233 Antisense
CGCTCTACTGGTTGCTTCCAAATTG 637 255 6248 Antisense
AATATTACCCTACTGACGACTACAA 632 163 6340 Antisense
GTCTGTACCTTTCCCAATTGATGGC 323 471 6374 Antisense
AGCAGATTGGACACCACCAGTGGCT 62 79 6452 Antisense
CCAGTGGCTGACCAAACCTGCATGA 14 271 6468 Antisense
GCATGATTTTCATTTCTGCTGCGCC 238 311 6487 Antisense
GTATACCGGGACTTTCAATTGACAA 566 453 6598 Antisense
ACGACCGTGACGCTAGTGCAGTTGT 216 91 6652 Antisense
Sequence Source Affymetrix Proprietary Database