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[194257_x_at]

Description g1208412-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g1208412 /5_PRIME_EXT_DB=GenBank Identifier /CHR=1 /FEA=Genomic Cluster /GEN=tmy-1 /DEF=CeTMI
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 06      6grp_total > 22      4grp_total > 59      6grp_highest_sub > De      6grp_cgc > 51      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10569
1 2 3 4 range
A 8781.5
(0.2)
P 		13703.1
(3)
P 		11844.3
(1.9)
P 		3239.6
(-3)
P 		10464
B 9590.6
(2.7)
P 		8514.7
(1.4)
P 		9830
(3)
P 		4753.5
(-3)
P 		5077
C 7444.8
(1.1)
P 		8946.7
(2.5)
P 		9419.7
(3)
P 		3133.7
(-3)
P 		6286
avr 8605.6
(1.4) 		10388.2
(3) 		10364.7
(3) 		3708.9
(-3) 		6679

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8213
1 2 3 4 5 6 range
A 12245
(3)
P 		10150.2
(1)
P 		10527.5
(1.3)
P 		8637.8
(-0.5)
P 		10866.2
(1.7)
P 		6068.9
(-3)
P 		6176
B 10141.8
(1.7)
P 		11276.8
(3)
P 		10172.7
(1.7)
P 		9750
(1.3)
P 		10381.4
(2)
P 		5995.1
(-3)
P 		5282
C 11163.7
(2.9)
P 		10910.3
(2.7)
P 		11320.3
(3)
P 		9823.2
(1.8)
P 		9975.8
(1.9)
P 		4031.8
(-3)
P 		7289
avr 11183.5
(3) 		10779.1
(2.6) 		10673.5
(2.5) 		9403.7
(1.2) 		10407.8
(2.2) 		5365.3
(-3) 		5818
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2809
1 2 3 4 range
A 3197.3
(3)
P 		2974.6
(2.5)
P 		3096.3
(2.8)
P 		474.2
(-3)
P 		2723
B 3058.4
(3)
P 		2102.9
(0.2)
P 		2277.8
(0.7)
P 		1013
(-3)
P 		2045
C 2464.4
(1.2)
P 		2572.2
(1.5)
P 		3283
(3)
P 		528.4
(-3)
P 		2755
avr 2906.7
(3) 		2549.9
(2) 		2885.7
(2.9) 		671.9
(-3) 		2235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2868
1 2 3 4 5 6 range
A 2257.3
(-0.8)
P 		3609.9
(3)
P 		2292.7
(-0.7)
P 		2190.7
(-1)
P 		3278.9
(2.1)
P 		1477.6
(-3)
P 		2132
B 3528.9
(0.9)
P 		3753.6
(1.6)
P 		2470.2
(-2.3)
P 		2582.4
(-2)
P 		4217.8
(3)
P 		2235.6
(-3)
P 		1982
C 4137.9
(3)
P 		3329.1
(1.3)
P 		2881.2
(0.3)
P 		1975.5
(-1.7)
P 		3228
(1)
P 		1349.7
(-3)
P 		2788
avr 3308
(2.2) 		3564.2
(3) 		2548
(-0.3) 		2249.5
(-1.2) 		3574.9
(3) 		1687.6
(-3) 		1887
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194257_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22695
Sequence Type Exemplar sequence
Representative Public ID 1208412 NCBI
Target Description g1208412-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g1208412 /5_PRIME_EXT_DB=GenBank Identifier /CHR=1 /FEA=Genomic Cluster /GEN=tmy-1 /DEF=CeTMI
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026524(11), NM_001026528(11), NM_001026526(11), NM_001026525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026524 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
NM_001026528 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
NM_001026526 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
NM_001026525 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
Y105E8B.1a.1 ENSEMBL cdna:known chromosome:CEL140:I:14628878:14639077:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1a.2 ENSEMBL cdna:known chromosome:CEL140:I:14628939:14639077:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1e.2 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633555:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1e.3 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633553:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1e.1 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633555:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1c ENSEMBL cdna:known chromosome:CEL140:I:14629281:14633553:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:14629292:14639190:-1 gene:Y105E8B.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026529 8/11 Cross Hyb Matching Probes None
NM_001026527 5/11 Cross Hyb Matching Probes None
GENEFINDER00000011752 7/11 Cross Hyb Matching Probes None
SNAP00000011730 1/11 Cross Hyb Matching Probes None
Y105E8B.1f 8/11 Cross Hyb Matching Probes A 
Y105E8B.1b.3 5/11 Cross Hyb Matching Probes B 
Y105E8B.1b.1 5/11 Cross Hyb Matching Probes None
Y105E8B.1b.4 5/11 Cross Hyb Matching Probes None
Y105E8B.1d 5/11 Cross Hyb Matching Probes B 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173319 6 4 NM_001026524 172001_x_at (11), 194257_x_at (11)
NM_001026525 172001_x_at (11), 175734_s_at (11), 194257_x_at (11)
NM_001026526 172001_x_at (11), 175734_s_at (11), 194257_x_at (11)
NM_001026528 171997_x_at (11), 172001_x_at (11), 175734_s_at (11), 176396_s_at (11), 194257_x_at (11)
NM_001026529 172001_x_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14629223-14639074(-) 98.97 98.97
Public Domain and Genome References
Ensembl Y105E8B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70114 Hypothetical protein Y105E8B.1a [Caenorhabditis elegans] ref|NP_001021695.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] sp|Q22866|TPM1_CAEEL Tropomyosin isoforms 1/2 dbj|BAA07543.1| CeTMI [Caenorhabditis elegans] 1.0E-129
blast BAA07540.1 CeTMI [Caenorhabditis elegans] 1.0E-127
blast A44980 tropomyosin, obliquely striated muscle - nematode (Trichostrongylus colubriformis) 1.0E-123
blast CAC70115 Hypothetical protein Y105E8B.1c [Caenorhabditis elegans] ref|NP_001021697.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] gb|AAG10302.1| tropomyosin isoform IV [Caenorhabditis elegans] 4.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR000533 EMBL-EBI Tropomyosin 1.0E-126
Pfam IPR000533 EMBL-EBI Tropomyosin 1.6E-121
Pfam IPR000533 EMBL-EBI Tropomyosin 3.6E-100
Pfam IPR000533 EMBL-EBI Tropomyosin 2.0E-109
Sequence
Target Sequence 
>C. ELEGANS:194257_X_AT
ggagctccgtgtcgtcggaaacaacttgaagtcacttgaggtgtccgaggagaaggctct
ccaacgtgaggactcgtacgaggagcagatccgcaccgtctcatccagactgaaggaggc
tgagacccgtgccgaattcgctgagcgttccgtccagaagctccagaaggaggtcgacag
actcgaagacgaattggtgcacgagaaggaacgctacaagaccatctccgaagaactcga
ttccaccttccaagagctctccggatattaaacatccatgtcctatcgcgttcctttttt
ccccccgcctacttgtattttcgtcacaacatcttatcccccccacccaaaaacctttga
aaccatcaaaaccactcaaactttcctattttctttacttttttaaatactttttataaa
agcttcacattatcaactgtttttctctgtgtattcatccccacccctcccatccaaaaa
ccaagaattctcttttagcagatgagaagcttcaattgttcttttttctttctctctcat
gcaaatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTCCGTGTCGTCGGAAACAAC 605 519 664 Antisense
AGAAGGCTCTCCAACGTGAGGACTC 486 73 714 Antisense
GCACCGTCTCATCCAGACTGAAGGA 567 313 756 Antisense
TGAAGGAGGCTGAGACCCGTGCCGA 190 575 774 Antisense
TGCCGAATTCGCTGAGCGTTCCGTC 590 585 793 Antisense
GACCATCTCCGAAGAACTCGATTCC 444 383 883 Antisense
ACCTTCCAAGAGCTCTCCGGATATT 314 71 908 Antisense
TATTTTCGTCACAACATCTTATCCC 40 663 979 Antisense
CTGTTTTTCTCTGTGTATTCATCCC 217 239 1100 Antisense
GCTTCAATTGTTCTTTTTTCTTTCT 409 303 1172 Antisense
TTTTCTTTCTCTCTCATGCAAATGT 380 677 1187 Antisense
Sequence Source GenBank