[Home] | [Total List]

[194256_x_at]

Description C32959_rc /REP_DB=TREMBL Accession /GB=C32959 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk337e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 40      6grp_total > 05      4grp_total > 61      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 472
1 2 3 4 range
A 685.9
(3)
P 		467.6
(0.1)
P 		526.3
(0.9)
P 		237.5
(-3)
P 		448
B 700.2
(3)
P 		568.9
(1)
P 		646.5
(2.2)
P 		300.8
(-3)
P 		399
C 615.8
(1.8)
P 		709.4
(3)
P 		652.7
(2.3)
P 		245
(-3)
P 		464
avr 667.3
(3) 		582
(1.7) 		608.5
(2.1) 		261.1
(-3) 		406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 666
1 2 3 4 5 6 range
A 1022.9
(3)
P 		860.3
(1.1)
P 		515
(-2.9)
P 		505
(-3)
P 		644.1
(-1.4)
P 		546.6
(-2.5)
P 		518
B 938.6
(3)
P 		639.3
(-0.4)
P 		511.4
(-1.9)
P 		614.9
(-0.7)
P 		455
(-2.6)
P 		418
(-3)
P 		521
C 745.2
(2.9)
P 		752.2
(3)
P 		709.4
(2.4)
P 		488
(-1)
P 		518.5
(-0.5)
P 		356.9
(-3)
P 		395
avr 902.2
(3) 		750.6
(1) 		578.6
(-1.2) 		536
(-1.8) 		539.2
(-1.7) 		440.5
(-3) 		462
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 249.8
(3)
P 		101.5
(-1.1)
P 		137.6
(-0.1)
P 		34.8
(-3)
P 		215
B 223.3
(3)
P 		140.5
(-0.1)
P 		149.8
(0.2)
P 		64.1
(-3)
P 		159
C 203.9
(2.2)
P 		203.9
(2.2)
P 		227.5
(3)
P 		41.3
(-3)
P 		186
avr 225.7
(3) 		148.6
(0.4) 		171.6
(1.2) 		46.7
(-3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 188.6
(-0.6)
P 		306
(3)
P 		112.2
(-3)
P 		128.1
(-2.5)
P 		194.4
(-0.5)
P 		133.1
(-2.4)
P 		194
B 326.6
(3)
P 		212.8
(-0.4)
P 		124.2
(-3)
P 		162.9
(-1.9)
P 		184.9
(-1.2)
P 		155.9
(-2.1)
P 		202
C 276.2
(3)
P 		229.5
(1.4)
P 		180.5
(-0.2)
P 		98.1
(-3)
P 		167.8
(-0.7)
P 		119.5
(-2.3)
P 		178
avr 263.8
(3) 		249.4
(2.4) 		139
(-2.6) 		129.7
(-3) 		182.4
(-0.6) 		136.2
(-2.7) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194256_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22150
Sequence Type Exemplar sequence
Representative Public ID C32959 NCBI
Target Description C32959_rc /REP_DB=TREMBL Accession /GB=C32959 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk337e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077136(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077136 NCBI Caenorhabditis elegans Apical Junction Molecule family member (ajm-1) (ajm-1) mRNA, complete cds. 11/11 None
C25A11.4c ENSEMBL cdna:known chromosome:CEL140:X:9098280:9110979:1 gene:C25A11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181148 4 1 NM_077135 188324_at (11), 189079_s_at (11)
NM_077136 188324_at (11), 194256_x_at (11)
NM_077137 175053_at (9)
NM_171966 188324_at (9), 189079_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9110647-9110968(+) 100.0 100.0
Public Domain and Genome References
Ensembl C25A11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39188 Apical junction molecule protein 1, isoform c [Caenorhabditis elegans] ref|NP_509537.1| Apical Junction Molecule family member (ajm-1) [Caenorhabditis elegans] 0.0
blast T15598 hypothetical protein C25A11.4a - Caenorhabditis elegans 0.0
blast AAK39187 Apical junction molecule protein 1, isoform a [Caenorhabditis elegans] ref|NP_509536.1| Apical Junction Molecule family member (ajm-1) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:194256_X_AT
ttcaaccctttttgcatttacctatgttcaatttttccgtttcaacatttttttctaata
tttaaaaagtcatatcccaagctcaaaaccattggaatacgaaatatcacttttaatttg
cttttattttcccatttgcttttcatccacttcttttcccagcatgaatattttcaatca
acttctttgcctttccccctgttacatttccccaatccacgcattcactttttcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAACCCTTTTTGCATTTACCTAT 13 685 57 Antisense
TTTGCATTTACCTATGTTCAATTTT 531 665 67 Antisense
TGTTCAATTTTTCCGTTTCAACATT 695 559 81 Antisense
AAGTCATATCCCAAGCTCAAAACCA 568 155 123 Antisense
ATCCCAAGCTCAAAACCATTGGAAT 667 37 130 Antisense
GAAATATCACTTTTAATTTGCTTTT 524 363 157 Antisense
ATTTGCTTTTATTTTCCCATTTGCT 581 17 172 Antisense
TTATTTTCCCATTTGCTTTTCATCC 385 679 180 Antisense
CCACTTCTTTTCCCAGCATGAATAT 269 275 203 Antisense
TTTCAATCAACTTCTTTGCCTTTCC 442 673 228 Antisense
AATCCACGCATTCACTTTTTCAAGA 605 167 270 Antisense
Sequence Source Affymetrix Proprietary Database