[Home] | [Total List]

[194251_x_at]

Description g1237257-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g1237257 /5_PRIME_EXT_DB=GenBank Identifier /CHR=1 /FEA=Genomic Cluster /GEN=unc-13 /DEF=UNC-13
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 14      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 31      6grp_total > 14      4grp_total > 39      6grp_highest_sub > 02      6grp_cgc > 41      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 912
1 2 3 4 range
A 1369
(3)
P 		615.9
(-2.3)
P 		521.9
(-3)
P 		701.4
(-1.7)
P 		847
B 1256.9
(3)
P 		626.6
(-1.7)
P 		457.5
(-3)
P 		780.1
(-0.6)
P 		799
C 1210.8
(3)
P 		547.5
(-2.9)
P 		534
(-3)
P 		679
(-1.7)
P 		677
avr 1278.9
(3) 		596.7
(-2.3) 		504.5
(-3) 		720.2
(-1.3) 		774

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 881
1 2 3 4 5 6 range
A 1132.4
(2.6)
P 		1171.7
(3)
P 		730.5
(-1.4)
P 		809.6
(-0.6)
P 		842.7
(-0.2)
P 		563.8
(-3)
P 		608
B 1307.4
(3)
P 		1282.2
(2.8)
P 		891.7
(-0.5)
P 		917.1
(-0.3)
P 		587
(-3)
P 		611.3
(-2.8)
P 		720
C 1163.2
(1.8)
P 		1345.9
(3)
P 		797.3
(-0.7)
P 		763.9
(-1)
P 		579
(-2.2)
P 		465.3
(-3)
P 		881
avr 1201
(2.5) 		1266.6
(3) 		806.5
(-0.8) 		830.2
(-0.6) 		669.6
(-2) 		546.8
(-3) 		720
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 498.5
(3)
P 		133.7
(-2.5)
P 		136.4
(-2.5)
P 		102.7
(-3)
P 		396
B 400.8
(3)
P 		154.8
(-2)
P 		106
(-3)
P 		166.2
(-1.8)
P 		295
C 400.8
(3)
P 		157.4
(-2.1)
P 		186.1
(-1.5)
P 		114.5
(-3)
P 		286
avr 433.4
(3) 		148.6
(-2.6) 		142.8
(-2.7) 		127.8
(-3) 		306

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 208.7
(-1.5)
P 		416.7
(3)
P 		159.1
(-2.5)
P 		205.3
(-1.5)
P 		254.3
(-0.5)
P 		137.3
(-3)
P 		279
B 454.9
(3)
P 		426.8
(2.3)
P 		216.5
(-3)
P 		242.9
(-2.3)
P 		238.5
(-2.4)
P 		228
(-2.7)
P 		238
C 431.2
(3)
P 		410.7
(2.6)
P 		202.9
(-1.9)
P 		153.6
(-3)
P 		187.3
(-2.3)
P 		155.8
(-3)
P 		278
avr 364.9
(1.7) 		418.1
(3) 		192.8
(-2.5) 		200.6
(-2.3) 		226.7
(-1.7) 		173.7
(-3) 		244
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194251_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23037
Sequence Type Exemplar sequence
Representative Public ID 1237257 NCBI
Target Description g1237257-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g1237257 /5_PRIME_EXT_DB=GenBank Identifier /CHR=1 /FEA=Genomic Cluster /GEN=unc-13 /DEF=UNC-13
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026703(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026703 NCBI Caenorhabditis elegans UNCoordinated family member (unc-13) (unc-13) mRNA, complete cds. 10/11 None
GENEFINDER00000017083 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7453508:7462030:1 10/11 None
ZK524.2e ENSEMBL cdna:known chromosome:CEL140:I:7430913:7462216:1 gene:ZK524.2 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026702 8/11 Cross Hyb Matching Probes None
NM_001026700 8/11 Cross Hyb Matching Probes None
NM_001026701 8/11 Cross Hyb Matching Probes None
SNAP00000017079 8/11 Cross Hyb Matching Probes None
ZK524.2d 8/11 Cross Hyb Matching Probes A 
ZK524.2a 8/11 Cross Hyb Matching Probes A 
ZK524.2c 8/11 Cross Hyb Matching Probes A 
ZK524.2b 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172497 4 1 NM_001026703 194251_x_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7430725-7461910(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK524.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE11299 Hypothetical protein ZK524.2e [Caenorhabditis elegans] emb|CAE11317.1| Hypothetical protein ZK524.2e [Caenorhabditis elegans] emb|CAE11294.1| Hypothetical protein ZK524.2e [Caenorhabditis elegans] ref|NP_001021874.1| UNCoordinated family member (unc-13) [Caenorhabditis elegans] 0.0
blast CAB01966 Hypothetical protein ZK524.2a [Caenorhabditis elegans] emb|CAA98147.1| Hypothetical protein ZK524.2a [Caenorhabditis elegans] emb|CAB07173.1| Hypothetical protein ZK524.2a [Caenorhabditis elegans] ref|NP_001021871.1| UNCoordinated family member (unc-13) [Caenorhabditis elegans] 0.0
blast AAA93094 UNC-13 0.0
blast CAD90170 Hypothetical protein ZK524.2d [Caenorhabditis elegans] emb|CAD90190.2| Hypothetical protein ZK524.2d [Caenorhabditis elegans] emb|CAD90173.2| Hypothetical protein ZK524.2d [Caenorhabditis elegans] ref|NP_001021873.1| UNCoordinated family member (unc-13) [Caenorhabditis elegans] sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 (Uncoordinated protein 13) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 9.0E-79
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 2.8E-74
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 4.1E-23
Pfam IPR000008 EMBL-EBI C2 domain 2.1E-6
Pfam IPR000008 EMBL-EBI C2 domain 5.8E-32
Pfam IPR000008 EMBL-EBI C2 domain 2.4E-17
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 9.0E-79
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 2.8E-74
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 4.1E-23
Pfam IPR000008 EMBL-EBI C2 domain 5.8E-32
Pfam IPR000008 EMBL-EBI C2 domain 2.4E-17
Sequence
Target Sequence 
>C. ELEGANS:194251_X_AT
aaagccttgccgcaaacgatcttcgatggcaaacctcgtcagctttcaaaccatttgttg
aagtgcatcttgtcggaccacatctttcagacaaaaagagaaaatggtcgacaaagacca
aagcaggcaactgggctccaaaattcaacgaaacttttcatttgttccttggaaatgaag
gagaacctgaacattacgagcttatgtttcaagtcaaggattactgttttgcacgagatg
atcgagttgttggagttggagttctgcagttatcatctgtcgttgatcaagggggatcct
gcgccatgtgggttcaacttggaactcgactgcatatcgacgagactgggctcattttgc
tcaggattctttcacagcgtcaaactgatgaggtggcaaaggactttgtacgcctaaaaa
cggaatgccgatacgagacagaaacagtaatggctgcatcagcatcaagtcaaaacatca
atcgaacatagtgattcaagtgcctttttttgttggattcaaagcaatagagttgttctt
cattcgatcaattttcatctcctctacgaatacctgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCTTGCCGCAAACGATCTTCG 350 123 5083 Antisense
GATCTTCGATGGCAAACCTCGTCAG 141 417 5100 Antisense
CCTCGTCAGCTTTCAAACCATTTGT 538 267 5116 Antisense
TCTTGTCGGACCACATCTTTCAGAC 261 617 5150 Antisense
GACCAAAGCAGGCAACTGGGCTCCA 23 383 5198 Antisense
GAGTTCTGCAGTTATCATCTGTCGT 168 399 5341 Antisense
ATCCTGCGCCATGTGGGTTCAACTT 558 39 5378 Antisense
GACGAGACTGGGCTCATTTTGCTCA 571 377 5421 Antisense
TGCTCAGGATTCTTTCACAGCGTCA 135 581 5440 Antisense
CATTCGATCAATTTTCATCTCCTCT 131 217 5623 Antisense
TCATCTCCTCTACGAATACCTGTAC 152 621 5637 Antisense
Sequence Source GenBank