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[194248_x_at]

Description C41381 /REP_DB=TREMBL Accession /GB=C41381 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk267b9 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 06      4grp_highest_8_8 > 47      4grp_high_8_8 > 12      6grp_total > 07      4grp_total > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 171.6
(-1.5)
P 		176.1
(-1.3)
P 		136.4
(-3)
P 		278.5
(3)
P 		142
B 180.8
(-0.5)
P 		104.1
(-2.9)
P 		100.6
(-3)
P 		291
(3)
P 		190
C 159.8
(2.2)
P 		151.7
(1.8)
P 		32.4
(-3)
P 		180.5
(3)
P 		148
avr 170.7
(0) 		144
(-1) 		89.8
(-3) 		250
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 220.1
(3)
P 		93.3
(-2.4)
P 		121.2
(-1.2)
P 		143.2
(-0.3)
P 		78.2
(-3)
A 		130.2
(-0.8)
P 		142
B 237.4
(3)
P 		138.7
(-0.3)
P 		116
(-1.1)
P 		118.6
(-1)
A 		100.1
(-1.6)
P 		58.5
(-3)
P 		179
C 199.7
(1.8)
P 		230
(3)
P 		148.3
(-0.2)
P 		123
(-1.2)
P 		76.3
(-3)
P 		150.9
(-0.1)
P 		154
avr 219.1
(3) 		154
(0.1) 		128.5
(-1.1) 		128.3
(-1.1) 		84.9
(-3) 		113.2
(-1.7) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 62.5
(3)
P 		38.2
(-2.4)
P 		35.7
(-3)
P 		40.8
(-1.9)
P 		27
B 57.7
(2.3)
P 		25.7
(-2.6)
P 		23.3
(-3)
P 		62
(3)
P 		39
C 52.9
(3)
P 		43.6
(1.7)
P 		11.3
(-3)
P 		30.4
(-0.2)
P 		42
avr 57.7
(3) 		35.8
(-0.8) 		23.4
(-3) 		44.4
(0.7) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 40.6
(3)
P 		33.2
(0.4)
P 		26.4
(-2)
P 		36.3
(1.5)
P 		23.6
(-3)
A 		31.7
(-0.1)
P 		17
B 82.6
(3)
P 		46.2
(-0.6)
P 		28.2
(-2.4)
P 		31.4
(-2.1)
A 		40.7
(-1.1)
P 		21.8
(-3)
P 		61
C 74
(3)
P 		70.2
(2.5)
P 		37.7
(-1.4)
P 		24.7
(-3)
P 		24.7
(-3)
P 		50.5
(0.1)
P 		49
avr 65.7
(3) 		49.9
(0.4) 		30.8
(-2.8) 		30.8
(-2.8) 		29.7
(-3) 		34.7
(-2.2) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194248_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20070
Sequence Type Exemplar sequence
Representative Public ID C41381 NCBI
Target Description C41381 /REP_DB=TREMBL Accession /GB=C41381 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk267b9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170824(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170824 NCBI Caenorhabditis elegans Y39G10AR.18a (Y39G10AR.18) mRNA, complete cds. 11/11 None
Y39G10AR.18a ENSEMBL cdna:known chromosome:CEL140:I:2382966:2401489:-1 gene:Y39G10AR.18 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058516 1/11 Cross Hyb Matching Probes None
NM_058414 1/11 Cross Hyb Matching Probes None
NM_058415 1/11 Cross Hyb Matching Probes None
NM_001026403 1/11 Cross Hyb Matching Probes None
NM_170809 1/11 Cross Hyb Matching Probes None
GENEFINDER00000032367 1/11 Cross Hyb Matching Probes None
SNAP00000010651 1/11 Cross Hyb Matching Probes None
GENEFINDER00000040547 1/11 Cross Hyb Matching Probes None
SNAP00000030035 1/11 Cross Hyb Matching Probes None
GENEFINDER00000036578 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005060 1/11 Cross Hyb Matching Probes None
Y34D9A.10.2 1/11 Cross Hyb Matching Probes None
Y34D9A.10.1 1/11 Cross Hyb Matching Probes None
Y34D9A.2 1/11 Cross Hyb Matching Probes A 
M01D7.7b 1/11 Cross Hyb Matching Probes A 
Y71G12A.3 1/11 Cross Hyb Matching Probes None
Y51F10.5 1/11 Cross Hyb Matching Probes None
Y20F4.2 1/11 Cross Hyb Matching Probes None
K03D7.3 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171797 2 1 NM_170824 176495_at (11), 194248_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2383029-2383316(-) 44.6 100.0
Public Domain and Genome References
Ensembl Y39G10AR.18
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740808 Y39G10AR.18a [Caenorhabditis elegans] gb|AAT39977.2| Hypothetical protein Y39G10AR.18a [Caenorhabditis elegans] 0.0
blast NP_740809 Y39G10AR.18b [Caenorhabditis elegans] gb|AAT39978.1| Hypothetical protein Y39G10AR.18b [Caenorhabditis elegans] 1.0E-155
blast CAE60379 Hypothetical protein CBG03980 [Caenorhabditis briggsae] 1.0E-151
Sequence
Target Sequence 
>C. ELEGANS:194248_X_AT
accgtgcctttatctctgaaaatctcctcactttatatgttttgatttttctcgaaaaat
tctttcaattcaattctgacgtggtgtcagagtgtctcatttcggcttgatctacgttga
tctacaaaaaaaagtgcggggaaatggaggcagagttctcaactcattttgcaacaaaaa
aaattcccgcattttttgtagatcaaaccgtaatgggacagcctctggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGTGCCTTTATCTCTGAAAATCT 613 87 28 Antisense
GCCTTTATCTCTGAAAATCTCCTCA 307 281 33 Antisense
AAATCTCCTCACTTTATATGTTTTG 610 117 47 Antisense
TTATATGTTTTGATTTTTCTCGAAA 654 679 60 Antisense
TCAATTCAATTCTGACGTGGTGTCA 524 633 92 Antisense
GGTGTCAGAGTGTCTCATTTCGGCT 661 499 110 Antisense
CTCATTTCGGCTTGATCTACGTTGA 16 229 123 Antisense
GAAATGGAGGCAGAGTTCTCAACTC 186 361 168 Antisense
GAGTTCTCAACTCATTTTGCAACAA 550 397 180 Antisense
AATTCCCGCATTTTTTGTAGATCAA 35 179 209 Antisense
AAACCGTAATGGGACAGCCTCTGGC 151 127 232 Antisense
Sequence Source Affymetrix Proprietary Database