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[194247_x_at]

Description g3882434 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=T24A11.1 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=T24A11.1 /WP=CE03708 /CHR=3 /FEA=Genomic Cluster /DEF=myotubularin homologous protein 1; (HINXTON) SW:Q22712 protein_id:CAA88884.1
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 87      6grp_total > 48      4grp_total > 05      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1164
1 2 3 4 range
A 1469.2
(-0.8)
P 		1074.9
(-3)
P 		1169.1
(-2.5)
P 		2129.5
(3)
P 		1055
B 1397.1
(-0.9)
P 		1014
(-2.9)
P 		993.4
(-3)
P 		2156.9
(3)
P 		1164
C 1462.1
(0.4)
P 		1110.9
(-3)
P 		1229.4
(-1.9)
P 		1735.3
(3)
P 		624
avr 1442.8
(-0.6) 		1066.6
(-3) 		1130.6
(-2.6) 		2007.2
(3) 		941

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 693
1 2 3 4 5 6 range
A 1275.6
(0.2)
P 		1337.1
(0.8)
P 		902.4
(-3)
P 		1139.8
(-0.9)
P 		1271.2
(0.2)
P 		1594.9
(3)
P 		693
B 1297.1
(0.2)
P 		1287.2
(0)
P 		1113.6
(-2.8)
P 		1179.4
(-1.7)
P 		1102.6
(-3)
P 		1471
(3)
P 		368
C 1531.3
(3)
P 		1207
(-0.5)
P 		1170
(-0.9)
P 		975.5
(-3)
P 		1251.5
(-0)
P 		1525.2
(2.9)
P 		556
avr 1368
(0.9) 		1277.1
(-0.2) 		1062
(-3) 		1098.2
(-2.5) 		1208.4
(-1.1) 		1530.4
(3) 		468
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 534.9
(3)
P 		233.3
(-3)
P 		305.6
(-1.6)
P 		311.7
(-1.4)
P 		302
B 445.5
(2.6)
P 		250.4
(-2.5)
P 		230.2
(-3)
P 		459.6
(3)
P 		229
C 484
(3)
P 		319.4
(-2.2)
P 		428.5
(1.3)
P 		292.6
(-3)
P 		191
avr 488.1
(3) 		267.7
(-3) 		321.4
(-1.5) 		354.6
(-0.6) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 371
1 2 3 4 5 6 range
A 235.1
(-2.2)
P 		475.5
(3)
P 		196.5
(-3)
P 		289.1
(-1)
P 		383.6
(1)
P 		388.3
(1.1)
P 		279
B 451.3
(0.9)
P 		428.5
(0.4)
P 		270.4
(-3)
P 		312.4
(-2.1)
P 		448
(0.8)
P 		548.5
(3)
P 		278
C 567.6
(3)
P 		368.3
(-0.2)
P 		297.8
(-1.4)
P 		196.2
(-3)
P 		405
(0.4)
P 		510.6
(2.1)
P 		371
avr 418
(1.3) 		424.1
(1.5) 		254.9
(-3) 		265.9
(-2.7) 		412.2
(1.1) 		482.5
(3) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194247_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24399
Sequence Type Exemplar sequence
Representative Public ID 3882434 NCBI
Target Description g3882434 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=T24A11.1 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=T24A11.1 /WP=CE03708 /CHR=3 /FEA=Genomic Cluster /DEF=myotubularin homologous protein 1; (HINXTON) SW:Q22712 protein_id:CAA88884.1
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065365(11), NM_001027623(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065365 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-3) (mtm-3) mRNA, complete cds. 11/11 A 
NM_001027623 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-3) (mtm-3) mRNA, complete cds. 11/11 None
T24A11.1b ENSEMBL cdna:known chromosome:CEL140:III:3789962:3800412:-1 gene:T24A11.1 11/11 A 
T24A11.1a ENSEMBL cdna:known chromosome:CEL140:III:3789962:3800443:-1 gene:T24A11.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027685 3/11 Cross Hyb Matching Probes None
SNAP00000027676 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3790444-3800016(-) 98.72 100.0
Public Domain and Genome References
Ensembl T24A11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61017 Hypothetical protein T24A11.1b [Caenorhabditis elegans] ref|NP_497766.2| MTM (myotubularin) family member (mtm-3) [Caenorhabditis elegans] 0.0
blast AAC78763 myotubularin homologous protein 1 [Caenorhabditis elegans] 0.0
blast CAA88884 Hypothetical protein T24A11.1a [Caenorhabditis elegans] ref|NP_001022794.1| MTM (myotubularin) family member (mtm-3) [Caenorhabditis elegans] sp|Q22712|YW91_CAEEL Hypothetical protein T24A11.1 in chromosome III 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010569 EMBL-EBI Myotubularin-related 1.2E-64
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 1.8E-25
Pfam IPR010569 EMBL-EBI Myotubularin-related 1.2E-64
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 1.8E-25
Sequence
Target Sequence 
>C. ELEGANS:194247_X_AT
aacgagttgccacatttcaagcctaatacaacgtgggaaggagaatcaggacattgtgct
tactgcaagaaagaattcaacaaattgagtgtctacgttgaggatcggcagcatcattgt
cggaattgtggacgagtagtctgtgaggattgttcgaagaatcgattttcggtgattgaa
gaaggaaaaagtgtgcagaagagagcatgtgattcgtgttatgattcaatgcatgagacg
gatttgaagcttagcagagcaacctctctgagtgaaatgtcatcatttgattcatttggt
ccatcatcaccacctgcatcatcaacatcatcttcatcactgaatatgcttgcttcaatg
tctccaactcgaccgcagcccataccaatttcgtgtaaatcctcatcaaattcgatctct
tccccgcgtccctcacctggcgaattcagtcgtcacagctcaacacaggctgtgaaaggc
tgaatttgtacattcagatttgtcacgcttagtactcatgattcctaatctttttcattc
attttcattgttttccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGAGTTGCCACATTTCAAGCCTA 528 143 2348 Antisense
GAGTGTCTACGTTGAGGATCGGCAG 58 401 2434 Antisense
GGATCGGCAGCATCATTGTCGGAAT 357 511 2449 Antisense
GATTCATTTGGTCCATCATCACCAC 385 431 2636 Antisense
GCATCATCAACATCATCTTCATCAC 590 309 2663 Antisense
TATGCTTGCTTCAATGTCTCCAACT 602 655 2692 Antisense
GCAGCCCATACCAATTTCGTGTAAA 620 313 2722 Antisense
TCCTCATCAAATTCGATCTCTTCCC 123 593 2747 Antisense
CTCACCTGGCGAATTCAGTCGTCAC 399 227 2779 Antisense
AGATTTGTCACGCTTAGTACTCATG 198 63 2843 Antisense
CATTCATTTTCATTGTTTTCCACCA 681 215 2883 Antisense
Sequence Source GenBank