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[194244_x_at]

Description C57216_rc /REP_DB=TREMBL Accession /GB=C57216 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk300f1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 34      4grp_high_8_8 > 49      6grp_highest_nonorm > 68      6grp_total > 38      4grp_total > 62      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1673
1 2 3 4 range
A 4015.9
(3)
P 		3285.9
(-0.8)
P 		3528.6
(0.5)
P 		2860.9
(-3)
P 		1155
B 4093.4
(3)
P 		3044
(-2.1)
P 		3506.2
(0.1)
P 		2861.8
(-3)
P 		1232
C 3227
(3)
P 		3184.1
(2.7)
P 		3025.1
(1.5)
P 		2420.1
(-3)
P 		807
avr 3778.8
(3) 		3171.3
(-0.4) 		3353.3
(0.6) 		2714.3
(-3) 		1065

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1930
1 2 3 4 5 6 range
A 2919.2
(3)
P 		1792.8
(-1.4)
P 		1514.5
(-2.5)
P 		1391.7
(-3)
P 		1941.3
(-0.8)
P 		2628.1
(1.9)
P 		1528
B 2991.3
(3)
P 		2243.1
(0.1)
P 		1458.3
(-3)
P 		1788.4
(-1.7)
P 		1882.9
(-1.3)
P 		2820.4
(2.3)
P 		1533
C 1945.7
(1.4)
P 		2262.5
(3)
P 		1468.5
(-1)
P 		1061
(-3)
P 		1626.4
(-0.2)
P 		2058.3
(2)
P 		1202
avr 2618.7
(3) 		2099.5
(0.4) 		1480.4
(-2.7) 		1413.7
(-3) 		1816.9
(-1) 		2502.3
(2.4) 		1205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1054
1 2 3 4 range
A 1462.2
(3)
P 		713.3
(-1.3)
P 		922.4
(-0.1)
P 		418.8
(-3)
P 		1043
B 1305.4
(3)
P 		751.8
(-1.8)
P 		812.5
(-1.3)
P 		609.9
(-3)
P 		696
C 1068.2
(3)
P 		915.5
(1.6)
P 		1054.3
(2.9)
P 		408.1
(-3)
P 		660
avr 1278.6
(3) 		793.5
(-0.6) 		929.7
(0.4) 		478.9
(-3) 		800

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 838
1 2 3 4 5 6 range
A 538.1
(1)
P 		637.6
(3)
P 		329.8
(-3)
P 		353
(-2.6)
P 		585.8
(2)
P 		639.9
(3)
P 		310
B 1040.8
(2.9)
P 		746.6
(0.4)
P 		354.1
(-3)
P 		473.7
(-2)
P 		765
(0.5)
P 		1051.7
(3)
P 		698
C 721.2
(3)
P 		690.4
(2.6)
P 		373.8
(-1.1)
P 		213.4
(-3)
P 		526.3
(0.7)
P 		689
(2.6)
P 		508
avr 766.7
(2.6) 		691.5
(1.6) 		352.6
(-2.9) 		346.7
(-3) 		625.7
(0.7) 		793.5
(3) 		447
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194244_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20637
Sequence Type Exemplar sequence
Representative Public ID C57216 NCBI
Target Description C57216_rc /REP_DB=TREMBL Accession /GB=C57216 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk300f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064041(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064041 NCBI Caenorhabditis elegans SR Protein (splicing factor) family member (rsp-1) (rsp-1) mRNA, complete cds. 10/11 A B 
W02B12.3c ENSEMBL cdna:known chromosome:CEL140:II:11453885:11455702:1 gene:W02B12.3 11/11 None
W02B12.3b.2 ENSEMBL cdna:known chromosome:CEL140:II:11453885:11455677:1 gene:W02B12.3 10/11 None
W02B12.3a ENSEMBL cdna:known chromosome:CEL140:II:11453885:11455712:1 gene:W02B12.3 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002907 5/11 Cross Hyb Matching Probes None
GENEFINDER00000002926 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174748 3 1 NM_064041 193678_at (11), 194244_x_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11455305-11455677(+) 91.75 100.0
Public Domain and Genome References
Ensembl W02B12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91395 Hypothetical protein W02B12.3a [Caenorhabditis elegans] ref|NP_496442.1| SR Protein (splicing factor) family member (rsp-1) [Caenorhabditis elegans] sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 (RNA-binding protein srp-5) (CeSRp75) 1.0E-83
blast CAE59504 Hypothetical protein CBG02890 [Caenorhabditis briggsae] 3.0E-81
blast CAD59160 Hypothetical protein W02B12.3c [Caenorhabditis elegans] ref|NP_871914.1| SR Protein (splicing factor) family member (rsp-1) [Caenorhabditis elegans] 3.0E-51
blast CAD59159 Hypothetical protein W02B12.3b [Caenorhabditis elegans] ref|NP_871913.1| SR Protein (splicing factor) family member (rsp-1) [Caenorhabditis elegans] 1.0E-49
blast CAA91394 Hypothetical protein W02B12.2 [Caenorhabditis elegans] ref|NP_496441.1| SR Protein (splicing factor) family member (rsp-2) [Caenorhabditis elegans] sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 (RNA-binding protein srp-4) (CeSRp40) 2.0E-47
blast CAA91395 Hypothetical protein W02B12.3a [Caenorhabditis elegans] ref|NP_496442.1| SR Protein (splicing factor) family member (rsp-1) [Caenorhabditis elegans] sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 (RNA-binding protein srp-5) (CeSRp75) 3.0E-47
blast CAA91395 Hypothetical protein W02B12.3a [Caenorhabditis elegans] ref|NP_496442.1| SR Protein (splicing factor) family member (rsp-1) [Caenorhabditis elegans] sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 (RNA-binding protein srp-5) (CeSRp75) 4.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.9E-19
Sequence
Target Sequence 
>C. ELEGANS:194244_X_AT
agcagaagccaaagtctcgttcgccatcaagatctccaaagaaggtcgatcgctctccat
ctccaccacgcggatcgcgttcgccttcggaaaagggatccccgagacgttcgagaagcg
catctccaatggataatggagacggtgacaactaaactcgcttcggttccaaaacaaatg
ttccgttatttaattaatcactaaattcaaatttccttattccacttctgtttctctttt
tacccaagctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGAAGCCAAAGTCTCGTTCGCC 603 75 19 Antisense
CGTTCGCCATCAAGATCTCCAAAGA 700 245 36 Antisense
TCCAAAGAAGGTCGATCGCTCTCCA 332 587 53 Antisense
TCGCGTTCGCCTTCGGAAAAGGGAT 193 403 93 Antisense
GATCCCCGAGACGTTCGAGAAGCGC 292 417 115 Antisense
GTTCGAGAAGCGCATCTCCAATGGA 60 443 127 Antisense
GACGGTGACAACTAAACTCGCTTCG 503 377 159 Antisense
ACTCGCTTCGGTTCCAAAACAAATG 344 99 174 Antisense
ATGTTCCGTTATTTAATTAATCACT 675 45 196 Antisense
TTCAAATTTCCTTATTCCACTTCTG 34 687 224 Antisense
TGTTTCTCTTTTTACCCAAGCTGAA 491 559 247 Antisense
Sequence Source Affymetrix Proprietary Database