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[194243_x_at]

Description CEK130G8R_rc /REP_DB=TREMBL Accession /GB=D65075 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk130g8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 10      6grp_total > 17      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 06      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4372
1 2 3 4 range
A 4695.8
(3)
P 		1830.1
(-1.2)
P 		628.3
(-3)
P 		2155.8
(-0.7)
P 		4068
B 4999.1
(3)
P 		2359.8
(-0.6)
P 		626.8
(-3)
P 		1884.7
(-1.3)
P 		4372
C 4209.8
(3)
P 		2362
(-0.3)
P 		846.7
(-3)
P 		2038.3
(-0.9)
P 		3363
avr 4634.9
(3) 		2184
(-0.7) 		700.6
(-3) 		2026.3
(-1) 		3934

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2916
1 2 3 4 5 6 range
A 3446.4
(3)
P 		1410.5
(-1.3)
P 		807.6
(-2.5)
P 		587
(-3)
P 		1163
(-1.8)
P 		1165.1
(-1.8)
P 		2859
B 2562.6
(3)
P 		1224.9
(-0.9)
P 		831.4
(-2.1)
P 		1005.5
(-1.6)
P 		530.4
(-3)
P 		1224.1
(-1)
P 		2032
C 2321.3
(3)
P 		1313.8
(-0.4)
P 		837.3
(-2)
P 		550.5
(-3)
P 		804.5
(-2.1)
P 		1078
(-1.2)
P 		1771
avr 2776.8
(3) 		1316.4
(-1.2) 		825.4
(-2.7) 		714.3
(-3) 		832.6
(-2.7) 		1155.7
(-1.7) 		2063
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1565
1 2 3 4 range
A 1709.7
(3)
P 		397.3
(-2.1)
P 		164.3
(-3)
P 		315.6
(-2.4)
P 		1545
B 1594.2
(3)
P 		582.8
(-1.2)
P 		145.2
(-3)
P 		401.6
(-1.9)
P 		1449
C 1393.6
(3)
P 		679.1
(-0.9)
P 		295.1
(-3)
P 		343.7
(-2.7)
P 		1099
avr 1565.8
(3) 		553.1
(-1.5) 		201.5
(-3) 		353.6
(-2.3) 		1364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 781
1 2 3 4 5 6 range
A 635.3
(3)
P 		501.6
(1.4)
P 		175.9
(-2.7)
P 		148.9
(-3)
P 		350.9
(-0.5)
P 		283.7
(-1.3)
P 		486
B 891.7
(3)
P 		407.7
(-1.2)
P 		201.9
(-3)
P 		266.3
(-2.4)
P 		215.5
(-2.9)
P 		456.5
(-0.8)
P 		690
C 860.4
(3)
P 		400.9
(-0.7)
P 		213.1
(-2.2)
P 		110.7
(-3)
P 		260.3
(-1.8)
P 		360.9
(-1)
P 		750
avr 795.8
(3) 		436.7
(-0.5) 		197
(-2.8) 		175.3
(-3) 		275.6
(-2) 		367
(-1.1) 		621
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194243_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20466
Sequence Type Exemplar sequence
Representative Public ID CEK130G8R NCBI
Target Description CEK130G8R_rc /REP_DB=TREMBL Accession /GB=D65075 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk130g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064540 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-5) (daf-5) mRNA, complete cds. 11/11 None
W01G7.1 ENSEMBL cdna:known chromosome:CEL140:II:14033108:14037613:-1 gene:W01G7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14033139-14033468(-) 93.62 100.0
Public Domain and Genome References
Gene Title
Gene Symbol daf-5
Ensembl W01G7.1
Entrez Gene 175054 Entrez gene
SwissProt Q9XVH7 EMBL-EBI
WormBase CE18985 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03453 Hypothetical protein W01G7.1 [Caenorhabditis elegans] ref|NP_496941.1| abnormal DAuer Formation family member (daf-5) [Caenorhabditis elegans] gb|AAR00670.1| abnormal DAuer Formation DAF-5, a Ski oncogene homolog involved in a neuronal TGF beta pathway (71.0 kD) (daf-5) [Caenorhabditis elegans] 0.0
blast CAE73392 Hypothetical protein CBG20832 [Caenorhabditis briggsae] 9.0E-87
Sequence
Target Sequence 
>C. ELEGANS:194243_X_AT
gtcctctccacaacaaaatacgcactttaaaaaatcaatgtatctctaccaaatgctgct
actcgaaaacttgtacctatttctaataatcttttcggttcgaaattcctctttttaata
atcacttctttttttctgttaatatatatatatatatatgctgcccggttcaatatgtat
tttgtcattcttgagtagccaaaatccccccaactccccccttcgattcaggacagtctc
catcccaaagcaacagttacggtatcactgcgttttttattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTCTCCACAACAAAATACGCAC 91 477 29 Antisense
GTATCTCTACCAAATGCTGCTACTC 698 453 68 Antisense
GCTGCTACTCGAAAACTTGTACCTA 545 297 83 Antisense
ACTTGTACCTATTTCTAATAATCTT 53 105 97 Antisense
GAAATTCCTCTTTTTAATAATCACT 511 361 130 Antisense
ATCACTTCTTTTTTTCTGTTAATAT 659 27 149 Antisense
TATGCTGCCCGGTTCAATATGTATT 643 657 185 Antisense
CATTCTTGAGTAGCCAAAATCCCCC 600 215 214 Antisense
TTCGATTCAGGACAGTCTCCATCCC 72 695 250 Antisense
TCTCCATCCCAAAGCAACAGTTACG 668 609 265 Antisense
TACGGTATCACTGCGTTTTTTATTT 528 647 286 Antisense
Sequence Source Affymetrix Proprietary Database