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[194242_x_at]

Description AV176937_rc /REP_DB=TREMBL Accession /GB=AV176937 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk520g4 : 3prime end, single read.
Cluster 6grp_total > 89      4grp_total > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 146.8
(2.1)
A 		168.2
(3)
A 		115.9
(0.7)
A 		29.2
(-3)
A 		139
B 146.3
(3)
A 		127.2
(1.8)
A 		109.9
(0.7)
A 		51.7
(-3)
A 		95
C 84
(-3)
A 		102.9
(-1.8)
A 		94.2
(-2.3)
A 		178
(3)
A 		94
avr 125.7
(2.1) 		132.8
(3) 		106.7
(-0.4) 		86.3
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 193
(1.8)
P 		21.6
(-3)
A 		79.2
(-1.4)
A 		48.7
(-2.2)
A 		196.4
(1.9)
A 		237.8
(3)
P 		216
B 74.2
(-2.2)
A 		113.1
(-0.7)
A 		92.1
(-1.5)
A 		54.6
(-3)
A 		138.9
(0.4)
A 		205.1
(3)
P 		151
C 91.3
(-3)
A 		137.2
(0.3)
A 		120.4
(-0.9)
A 		110.7
(-1.6)
A 		140.2
(0.5)
A 		175.7
(3)
P 		84
avr 119.5
(-0.9) 		90.6
(-2.1) 		97.2
(-1.8) 		71.3
(-3) 		158.5
(0.9) 		206.2
(3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 53.4
(3)
A 		36.5
(0.9)
A 		30.3
(0.2)
A 		4.3
(-3)
A 		49
B 46.7
(3)
A 		31.4
(0.4)
A 		25.5
(-0.6)
A 		11
(-3)
A 		36
C 27.8
(-3)
A 		29.6
(-0.8)
A 		32.8
(3)
A 		30
(-0.4)
A 		5
avr 42.6
(3) 		32.5
(0.8) 		29.5
(0.1) 		15.1
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 35.6
(0.2)
P 		7.7
(-3)
A 		17.3
(-1.9)
A 		12.3
(-2.5)
A 		59.3
(3)
A 		57.9
(2.8)
P 		52
B 25.8
(-1.9)
A 		37.6
(-0.8)
A 		22.4
(-2.2)
A 		14.5
(-3)
A 		56.4
(1.1)
A 		76.5
(3)
P 		62
C 33.8
(-1.1)
A 		41.9
(0.2)
A 		30.6
(-1.6)
A 		22.3
(-3)
A 		45.4
(0.8)
A 		58.8
(3)
P 		37
avr 31.7
(-1.1) 		29.1
(-1.4) 		23.4
(-2.1) 		16.4
(-3) 		53.7
(1.7) 		64.4
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194242_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20853
Sequence Type Exemplar sequence
Representative Public ID AV176937 NCBI
Target Description AV176937_rc /REP_DB=TREMBL Accession /GB=AV176937 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk520g4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062196 NCBI Caenorhabditis elegans M151.7 (M151.7) mRNA, complete cds. 11/11 None
SNAP00000044214 ENSEMBL cdna:SNAP chromosome:CEL140:II:3622331:3623920:1 9/11 None
GENEFINDER00000044228 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3622331:3623920:1 9/11 None
M151.7 ENSEMBL cdna:known chromosome:CEL140:II:3622306:3623992:1 gene:M151.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062198 2/11 Cross Hyb Matching Probes A 
SNAP00000044217 2/11 Cross Hyb Matching Probes None
GENEFINDER00000044227 2/11 Cross Hyb Matching Probes None
M151.3 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3623575-3623981(+) 98.66 98.66
chrII:3630520-3630915(+) 91.97 91.97
Public Domain and Genome References
Gene Title
Ensembl M151.7
Entrez Gene 173707 Entrez gene
SwissProt Q965L8 EMBL-EBI
WormBase CE28628 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494597 M151.7 [Caenorhabditis elegans] gb|AAK77624.1| Hypothetical protein M151.7 [Caenorhabditis elegans] 1.0E-178
blast T32297 hypothetical protein M151.4 - Caenorhabditis elegans 1.0E-175
blast NP_494597 M151.7 [Caenorhabditis elegans] gb|AAK77624.1| Hypothetical protein M151.7 [Caenorhabditis elegans] 1.0E-175
blast NP_494599 M151.3 [Caenorhabditis elegans] gb|AAB70373.1| Hypothetical protein M151.3 [Caenorhabditis elegans] 1.0E-118
blast NP_494599 M151.3 [Caenorhabditis elegans] gb|AAB70373.1| Hypothetical protein M151.3 [Caenorhabditis elegans] 1.0E-115
Sequence
Target Sequence 
>C. ELEGANS:194242_X_AT
cccaaccacactcccaaggattttggacacctccagtgtacctcggacctccgaaagttc
ttcccagaaaaagttgaactcgaagcccgtgagagcccgaaaagatctagaggaggcggc
ggaagaggacgcggagccagccgagccaaacgaggaagagccatcgttcccacctatgat
atgattttggaggctcacagcaagccctatgtccaccgtaactactgagccggttcattc
tctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAACCACACTCCCAAGGATTTTG 53 257 22 Antisense
ATTTTGGACACCTCCAGTGTACCTC 194 13 41 Antisense
TGTACCTCGGACCTCCGAAAGTTCT 454 559 58 Antisense
GTTGAACTCGAAGCCCGTGAGAGCC 453 437 94 Antisense
GAAGCCCGTGAGAGCCCGAAAAGAT 160 345 103 Antisense
AGGCGGCGGAAGAGGACGCGGAGCC 501 53 135 Antisense
AGCCAGCCGAGCCAAACGAGGAAGA 681 83 156 Antisense
CCATCGTTCCCACCTATGATATGAT 579 271 182 Antisense
TTGGAGGCTCACAGCAAGCCCTATG 170 695 208 Antisense
CTATGTCCACCGTAACTACTGAGCC 366 225 228 Antisense
AACTACTGAGCCGGTTCATTCTCTT 464 139 241 Antisense
Sequence Source Affymetrix Proprietary Database