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[194241_x_at]

Description AV184447_rc /REP_DB=TREMBL Accession /GB=AV184447 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk664f8 : 3prime end, single read.
Cluster 6grp_total > 78      4grp_total > 28      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 35.6
(-0.5)
A 		38.6
(0.3)
A 		25.6
(-3)
A 		49.4
(3)
A 		24
B 72.7
(3)
A 		25.9
(-1.2)
A 		6.5
(-3)
A 		37.5
(-0.2)
A 		66
C 5
(-2.6)
A 		45.3
(3)
A 		1.8
(-3)
A 		41.1
(2.4)
A 		44
avr 37.8
(2.1) 		36.6
(1.8) 		11.3
(-3) 		42.7
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 46.2
(1.5)
A 		26
(-0.5)
A 		1.1
(-3)
A 		12.7
(-1.8)
A 		7
(-2.4)
A 		61.6
(3)
P 		61
B 2.8
(-3)
A 		22.6
(-1.6)
A 		6.6
(-2.7)
A 		20.5
(-1.8)
A 		41.5
(-0.3)
P 		89.8
(3)
P 		87
C 7.2
(-3)
A 		33.3
(-0.5)
A 		30.8
(-0.8)
A 		24
(-1.4)
A 		51.8
(1.2)
A 		70.3
(3)
P 		63
avr 18.7
(-2.4) 		27.3
(-1.6) 		12.8
(-3) 		19.1
(-2.4) 		33.4
(-1) 		73.9
(3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 13
(3)
A 		8.4
(-1.4)
A 		6.7
(-3)
A 		7.2
(-2.5)
A 		6
B 23.2
(3)
A 		6.4
(-1.6)
A 		1.5
(-3)
A 		8
(-1.2)
A 		22
C 1.7
(-2.5)
A 		13
(3)
A 		0.6
(-3)
A 		6.9
(0)
A 		12
avr 12.6
(3) 		9.3
(1) 		2.9
(-3) 		7.4
(-0.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 8.5
(0.4)
A 		9.2
(0.6)
A 		0.2
(-3)
A 		3.2
(-1.8)
A 		2.1
(-2.2)
A 		15
(3)
P 		15
B 1
(-3)
A 		7.5
(-1.8)
A 		1.6
(-2.9)
A 		5.4
(-2.2)
A 		16.9
(-0.1)
P 		33.5
(3)
P 		33
C 2.7
(-3)
A 		10.1
(-0.9)
A 		7.8
(-1.5)
A 		4.8
(-2.4)
A 		16.8
(1.1)
A 		23.5
(3)
P 		21
avr 4.1
(-2.7) 		8.9
(-1.4) 		3.2
(-3) 		4.5
(-2.6) 		11.9
(-0.5) 		24
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194241_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22450
Sequence Type Exemplar sequence
Representative Public ID AV184447 NCBI
Target Description AV184447_rc /REP_DB=TREMBL Accession /GB=AV184447 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk664f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075920 NCBI Caenorhabditis elegans Y75D11A.3 (Y75D11A.3) mRNA, complete cds. 11/11 A 
Y75D11A.3 ENSEMBL cdna:known chromosome:CEL140:X:1745263:1746212:-1 gene:Y75D11A.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021979 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021983 2/11 Cross Hyb Matching Probes None
SNAP00000021927 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1743462-1743860(+) 92.91 92.91
chrX:1745272-1745576(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75D11A.3
Entrez Gene 180499 Entrez gene
SwissProt Q9N4D0 EMBL-EBI
WormBase CE23050 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36056 Hypothetical protein Y75D11A.3 [Caenorhabditis elegans] ref|NP_508321.1| Y75D11A.3 [Caenorhabditis elegans] 4.0E-96
blast AAF36058 Hypothetical protein Y75D11A.2 [Caenorhabditis elegans] ref|NP_508320.1| Y75D11A.2 [Caenorhabditis elegans] 5.0E-93
Sequence
Target Sequence 
>C. ELEGANS:194241_X_AT
gagtttgtcgattgctgagcgcgtcaagcgcattcgtttggacaattagggtgtgacaga
gctctacacacttcttccatcgacaccttccctcggcacgcctgcacattcaattgaatc
aactcattcaaagtactgtttatcctgattttacccccttttttttctggtaccactttg
ccttaatttttttttctctccacatttttttttgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTGTCGATTGCTGAGCGCGTC 265 399 20 Antisense
GTCGATTGCTGAGCGCGTCAAGCGC 370 473 26 Antisense
GCGTCAAGCGCATTCGTTTGGACAA 626 289 40 Antisense
GGACAATTAGGGTGTGACAGAGCTC 371 525 59 Antisense
TGTGACAGAGCTCTACACACTTCTT 153 557 71 Antisense
GCACGCCTGCACATTCAATTGAATC 589 315 115 Antisense
GAATCAACTCATTCAAAGTACTGTT 587 327 135 Antisense
CAAAGTACTGTTTATCCTGATTTTA 180 189 148 Antisense
TTTTCTGGTACCACTTTGCCTTAAT 115 547 182 Antisense
TCTGGTACCACTTTGCCTTAATTTT 549 607 185 Antisense
TTTCTCTCCACATTTTTTTTTGCCA 493 671 212 Antisense
Sequence Source Affymetrix Proprietary Database