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[194238_x_at]

Description C50239 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F09B12.1B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C50239 /WB_GENE_ID=F09B12.1B /WP=CE23634 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk479c6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 53      6grp_total > 82      4grp_total > 57      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1552
1 2 3 4 range
A 5.9
(-3)
A 		1297.8
(2.6)
P 		1398.5
(3)
P 		19.1
(-2.9)
A 		1393
B 7.3
(-3)
A 		1159.1
(1.5)
P 		1558.3
(3)
P 		64.4
(-2.8)
A 		1551
C 39.4
(-3)
A 		1120.7
(2)
P 		1347.4
(3)
P 		112.6
(-2.7)
A 		1308
avr 17.5
(-3) 		1192.5
(2) 		1434.7
(3) 		65.4
(-2.8) 		1417

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 978
1 2 3 4 5 6 range
A 304
(-2.6)
P 		894.9
(2)
P 		549.4
(-0.7)
P 		1018.2
(3)
P 		967.5
(2.6)
P 		248.9
(-3)
P 		769
B 316.8
(-2.8)
P 		927.2
(1.3)
P 		679.8
(-0.3)
P 		1175.3
(3)
P 		779.2
(0.3)
P 		281.8
(-3)
P 		894
C 242.3
(-2.7)
P 		900.3
(2.1)
P 		665.9
(0.4)
P 		786.1
(1.2)
P 		1031.2
(3)
P 		196.9
(-3)
P 		834
avr 287.7
(-2.6) 		907.5
(2.3) 		631.7
(0.1) 		993.2
(3) 		926
(2.5) 		242.5
(-3) 		751
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 2.1
(-3)
A 		281.7
(1.6)
P 		365.6
(3)
P 		2.8
(-3)
A 		364
B 2.3
(-3)
A 		286.3
(1.7)
P 		361.1
(3)
P 		13.7
(-2.8)
A 		359
C 13
(-3)
A 		322.2
(1.1)
P 		469.6
(3)
P 		19
(-2.9)
A 		457
avr 5.8
(-3) 		296.7
(1.4) 		398.8
(3) 		11.8
(-2.9) 		393

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 56
(-3)
P 		318.3
(3)
P 		119.6
(-1.5)
P 		258.2
(1.6)
P 		291.9
(2.4)
P 		60.6
(-2.9)
P 		262
B 110.2
(-2.9)
P 		308.6
(2.8)
P 		165.1
(-1.3)
P 		311.3
(2.8)
P 		316.6
(3)
P 		105.1
(-3)
P 		212
C 89.8
(-2.5)
P 		274.7
(1.7)
P 		169.5
(-0.7)
P 		158.1
(-0.9)
P 		333.7
(3)
P 		65.9
(-3)
P 		268
avr 85.3
(-2.8) 		300.5
(2.7) 		151.4
(-1.1) 		242.5
(1.2) 		314.1
(3) 		77.2
(-3) 		237
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194238_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26031
Sequence Type Exemplar sequence
Representative Public ID C50239 NCBI
Target Description C50239 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F09B12.1B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C50239 /WB_GENE_ID=F09B12.1B /WP=CE23634 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk479c6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078111(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078111 NCBI Caenorhabditis elegans F09B12.1b (F09B12.1) mRNA, complete cds. 11/11 A 
F09B12.1b.2 ENSEMBL cdna:known chromosome:CEL140:X:15101703:15107685:-1 gene:F09B12.1 11/11 None
F09B12.1b.1 ENSEMBL cdna:known chromosome:CEL140:X:15101703:15107883:-1 gene:F09B12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078110 8/11 Cross Hyb Matching Probes A 
SNAP00000031085 8/11 Cross Hyb Matching Probes None
GENEFINDER00000031091 8/11 Cross Hyb Matching Probes None
F09B12.1a 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181607 2 1 NM_078111 194238_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15101775-15107658(-) 97.98 100.0
Public Domain and Genome References
Ensembl F09B12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54203 Hypothetical protein F09B12.1b [Caenorhabditis elegans] ref|NP_510512.1| F09B12.1b [Caenorhabditis elegans] 0.0
blast CAB54204 Hypothetical protein F09B12.1a [Caenorhabditis elegans] ref|NP_510511.1| F09B12.1a [Caenorhabditis elegans] 0.0
blast F89719 protein F09B12.1 [imported] - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:194238_X_AT
ccgaaggagagtactatgccgccacattcctcttcccaagagagatggccggacttgaag
catcggtggctccgttcactgagcaatcgagaatccgattccattattacgagggaactc
acggagttcagctcaagggatgttgcaccaatattgagaactgtccgttcagctctgaca
agtttgtgacggtggccgaccgtgcttggaagacggcttctttcaagtgtccaaagggaa
ctgataaggttattttcatctgtgaaaacacaagaaccaaccaaggagcctgtgccgtcg
acggaatcggactcgtggaaaacgagggaccactgaagaccgctaaaccactttgctaag
ctccttttaatttttttcaattaattattaatttcattattatcacttgatatcagaatt
ttctttccaatccaccgggaaccaaccatgccatatcaatttctcatccactctcttctt
caattgcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGAAGGAGAGTACTATGCCGCCAC 638 261 1347 Antisense
GTGGCTCCGTTCACTGAGCAATCGA 653 491 1412 Antisense
AACTGTCCGTTCAGCTCTGACAAGT 402 141 1505 Antisense
GACAAGTTTGTGACGGTGGCCGACC 2 365 1523 Antisense
GAAGACGGCTTCTTTCAAGTGTCCA 443 339 1555 Antisense
AGAACCAACCAAGGAGCCTGTGCCG 82 75 1619 Antisense
CCGTCGACGGAATCGGACTCGTGGA 245 1 1641 Antisense
GAGGGACCACTGAAGACCGCTAAAC 541 401 1670 Antisense
GCTAAACCACTTTGCTAAGCTCCTT 48 301 1688 Antisense
ATGCCATATCAATTTCTCATCCACT 456 41 1794 Antisense
TCCACTCTCTTCTTCAATTGCAATT 328 589 1813 Antisense
Sequence Source Affymetrix Proprietary Database