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[194237_x_at]

Description AV176202_rc /REP_DB=TREMBL Accession /GB=AV176202 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk509e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 24      4grp_high_8_8 > 60      6grp_highest_nonorm > 04      6grp_total > 15      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4239
1 2 3 4 range
A 6960.3
(0.7)
P 		8368.9
(3)
P 		7571.9
(1.7)
P 		4733.7
(-3)
P 		3635
B 7259.7
(2.8)
P 		6942.1
(2.1)
P 		7376.3
(3)
P 		4550
(-3)
P 		2826
C 6619
(2.5)
P 		6148.4
(1.5)
P 		6850.5
(3)
P 		4129.6
(-3)
P 		2721
avr 6946.3
(2.3) 		7153.1
(2.8) 		7266.2
(3) 		4471.1
(-3) 		2795

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3388
1 2 3 4 5 6 range
A 6308.1
(3)
P 		6212.4
(2.8)
P 		5191.5
(0.9)
P 		3802
(-1.7)
P 		3863
(-1.6)
P 		3089.5
(-3)
P 		3219
B 5855.9
(2.2)
P 		6238.6
(3)
P 		4245.3
(-1.1)
P 		4132.2
(-1.3)
P 		3864
(-1.9)
P 		3301.7
(-3)
P 		2937
C 6200.7
(3)
P 		5958.2
(2.6)
P 		4902.2
(0.6)
P 		3302.6
(-2.3)
P 		4076.9
(-0.9)
P 		2919.7
(-3)
P 		3281
avr 6121.6
(3) 		6136.4
(3) 		4779.7
(0.3) 		3745.6
(-1.7) 		3934.6
(-1.4) 		3103.6
(-3) 		3033
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1841
1 2 3 4 range
A 2534.2
(3)
P 		1816.7
(0.7)
P 		1979.4
(1.2)
P 		692.9
(-3)
P 		1841
B 2315.1
(3)
P 		1714.5
(0.3)
P 		1709.3
(0.3)
P 		969.6
(-3)
P 		1346
C 2191.1
(2.3)
P 		1767.7
(0.8)
P 		2387.6
(3)
P 		696.3
(-3)
P 		1691
avr 2346.8
(3) 		1766.3
(0.8) 		2025.4
(1.8) 		786.3
(-3) 		1561

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1634
1 2 3 4 5 6 range
A 1162.8
(-1.3)
P 		2209.4
(3)
P 		1130.6
(-1.4)
P 		964.3
(-2.1)
P 		1165.7
(-1.3)
P 		752.2
(-3)
P 		1457
B 2037.6
(2.8)
P 		2076.6
(3)
P 		1030.9
(-3)
P 		1094.5
(-2.6)
P 		1569.9
(0.1)
P 		1231.2
(-1.9)
P 		1046
C 2298.3
(3)
P 		1818
(1.2)
P 		1247.7
(-0.9)
P 		664.2
(-3)
P 		1319.2
(-0.6)
P 		977.4
(-1.9)
P 		1634
avr 1832.9
(1.9) 		2034.7
(3) 		1136.4
(-1.8) 		907.7
(-3) 		1351.6
(-0.6) 		986.9
(-2.6) 		1127
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194237_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22286
Sequence Type Exemplar sequence
Representative Public ID AV176202 NCBI
Target Description AV176202_rc /REP_DB=TREMBL Accession /GB=AV176202 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk509e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077959(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077959 NCBI Caenorhabditis elegans R03E1.2 (R03E1.2) mRNA, complete cds. 11/11 A 
R03E1.2.1 ENSEMBL cdna:known chromosome:CEL140:X:14162873:14164426:-1 gene:R03E1.2 11/11 A 
R03E1.2.2 ENSEMBL cdna:known chromosome:CEL140:X:14163030:14164428:-1 gene:R03E1.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040385 4/11 Cross Hyb Matching Probes None
GENEFINDER00000040390 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14163088-14163354(-) 98.52 98.52
Public Domain and Genome References
Gene Title
Ensembl R03E1.2
Entrez Gene 181526 Entrez gene
SwissProt Q9XTY9 EMBL-EBI
WormBase CE18902 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07401 Hypothetical protein R03E1.2 [Caenorhabditis elegans] ref|NP_510360.1| R03E1.2 [Caenorhabditis elegans] 1.0E-148
blast CAE69931 Hypothetical protein CBG16307 [Caenorhabditis briggsae] 1.0E-115
blast CAE56204 Hypothetical protein CBG23828 [Caenorhabditis briggsae] 3.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510360.1 1 283-305
R03E1.2.1 1 283-305
R03E1.2.2 1 283-305
Sequence
Target Sequence 
>C. ELEGANS:194237_X_AT
gttgtgggaatggcctcaatcgacccagagaaggattccatcatctatcgtatgaccacc
acaagaatgaagaaagactagattctacagcatcttcatcaaatgagcactatgctcacc
atgtttcactgttgaaaatactattttcgatattattttcaaattcttaatttctgatta
ccgttcgagacattccattttccaatttttccagtaattgattgtattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTGGGAATGGCCTCAATCGACC 369 437 22 Antisense
TGGCCTCAATCGACCCAGAGAAGGA 550 543 32 Antisense
GAGAAGGATTCCATCATCTATCGTA 154 391 49 Antisense
CATCTATCGTATGACCACCACAAGA 554 209 63 Antisense
AGACTAGATTCTACAGCATCTTCAT 65 71 96 Antisense
GAGCACTATGCTCACCATGTTTCAC 4 391 126 Antisense
ATGCTCACCATGTTTCACTGTTGAA 280 43 133 Antisense
TTCTTAATTTCTGATTACCGTTCGA 664 671 185 Antisense
TACCGTTCGAGACATTCCATTTTCC 57 649 200 Antisense
GACATTCCATTTTCCAATTTTTCCA 267 371 210 Antisense
ATTTTTCCAGTAATTGATTGTATTC 535 15 226 Antisense
Sequence Source Affymetrix Proprietary Database