[Home] | [Total List]

[194236_x_at]

Description g9857642-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g9857642 /5_PRIME_EXT_DB=GenBank Identifier /CHR=2 /FEA=Genomic Cluster /GEN=lec-2 /DEF=galectin LEC-2
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 29      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 06      6grp_total > 28      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5436
1 2 3 4 range
A 10123.8
(-1.3)
P 		8746.4
(-3)
P 		9540
(-2)
P 		13661.6
(3)
P 		4915
B 10257.5
(-1.7)
P 		9119
(-3)
P 		10060.7
(-1.9)
P 		14182.8
(3)
P 		5064
C 9583.5
(-1.6)
P 		9130
(-2.4)
P 		8758.1
(-3)
P 		12313.4
(3)
P 		3555
avr 9988.3
(-1.6) 		8998.5
(-3) 		9452.9
(-2.4) 		13385.9
(3) 		4387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5452
1 2 3 4 5 6 range
A 11143.1
(2.9)
P 		11195.4
(3)
P 		9467.6
(0.3)
P 		7390.5
(-3)
P 		9084.9
(-0.3)
P 		10165.8
(1.4)
P 		3805
B 10380.8
(3)
P 		9520
(1)
P 		8261.1
(-2)
P 		7855.9
(-3)
P 		7956.6
(-2.8)
P 		8775.1
(-0.8)
P 		2525
C 10172.3
(3)
P 		8791.2
(1.1)
P 		9730.5
(2.4)
P 		5743.2
(-3)
P 		9550.4
(2.2)
P 		8578.4
(0.8)
P 		4429
avr 10565.4
(3) 		9835.5
(1.8) 		9153.1
(0.6) 		6996.5
(-3) 		8864
(0.1) 		9173.1
(0.7) 		3569
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1788
1 2 3 4 range
A 3686.1
(3)
P 		1898.6
(-3)
P 		2493.9
(-1)
P 		1999.8
(-2.7)
P 		1788
B 3271
(3)
P 		2252.2
(-3)
P 		2331.3
(-2.5)
P 		3022.4
(1.5)
P 		1019
C 3172.4
(3)
P 		2624.9
(0)
P 		3052.5
(2.3)
P 		2076.2
(-3)
P 		1096
avr 3376.5
(3) 		2258.6
(-3) 		2625.9
(-1) 		2366.1
(-2.4) 		1118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2827
1 2 3 4 5 6 range
A 2054.1
(-2.5)
P 		3981.6
(3)
P 		2061.8
(-2.5)
P 		1874.4
(-3)
P 		2741.4
(-0.5)
P 		2475
(-1.3)
P 		2107
B 3612
(3)
P 		3168.8
(1.3)
P 		2006
(-3)
P 		2080.7
(-2.7)
P 		3232.7
(1.6)
P 		3272.2
(1.7)
P 		1606
C 3770.4
(3)
P 		2682.5
(0.5)
P 		2476.6
(0)
P 		1155
(-3)
P 		3090.4
(1.4)
P 		2871.7
(0.9)
P 		2615
avr 3145.5
(2.5) 		3277.6
(3) 		2181.5
(-1.2) 		1703.4
(-3) 		3021.5
(2) 		2873
(1.5) 		1574
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194236_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23280
Sequence Type Exemplar sequence
Representative Public ID 9857642 NCBI
Target Description g9857642-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g9857642 /5_PRIME_EXT_DB=GenBank Identifier /CHR=2 /FEA=Genomic Cluster /GEN=lec-2 /DEF=galectin LEC-2
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027018(10), NM_063764(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027018 NCBI Caenorhabditis elegans gaLECtin family member (lec-2) (lec-2) mRNA, complete cds. 10/11 None
NM_063764 NCBI Caenorhabditis elegans gaLECtin family member (lec-2) (lec-2) mRNA, complete cds. 9/11 A 
SNAP00000021621 ENSEMBL cdna:SNAP chromosome:CEL140:II:10009804:10011196:-1 9/11 None
GENEFINDER00000021633 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10009804:10016159:-1 9/11 None
F52H3.7b.2 ENSEMBL cdna:known chromosome:CEL140:II:10009517:10014650:-1 gene:F52H3.7 10/11 A 
F52H3.7b.1 ENSEMBL cdna:known chromosome:CEL140:II:10009517:10011244:-1 gene:F52H3.7 10/11 A 
F52H3.7b.3 ENSEMBL cdna:known chromosome:CEL140:II:10009520:10011246:-1 gene:F52H3.7 10/11 A 
F52H3.7a ENSEMBL cdna:known chromosome:CEL140:II:10009804:10015971:-1 gene:F52H3.7 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10009676-10011244(-) 99.12 99.12
Public Domain and Genome References
Ensembl F52H3.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91327 Hypothetical protein F52H3.7a [Caenorhabditis elegans] ref|NP_496165.3| gaLECtin family member (lec-2) [Caenorhabditis elegans] 0.0
blast CAA91327 Hypothetical protein F52H3.7a [Caenorhabditis elegans] ref|NP_496165.3| gaLECtin family member (lec-2) [Caenorhabditis elegans] 1.0E-162
blast CAC70097 Hypothetical protein F52H3.7b [Caenorhabditis elegans] ref|NP_001022189.1| gaLECtin family member (lec-2) [Caenorhabditis elegans] dbj|BAB11968.1| galectin LEC-2 [Caenorhabditis elegans] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 4.3E-27
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 6.6E-55
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 4.3E-27
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 6.6E-55
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 4.3E-27
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 6.6E-55
Sequence
Target Sequence 
>C. ELEGANS:194236_X_AT
ggagtacgagcatcgtgtgccactctcctccatcacacacttcactatcgacggagatgt
tcttgtcaactacattcactggggaggaaagtactagccagttccatatgagagtgggct
cgccggagagggacttgccccaggcaagactcttactgtctttggaattccagagaagaa
ggccaagagattccacatcaatcttctcaagaagaacggagatattgctcttcatcttaa
cgctcgtttcgatgagaagcacgtcgttcgcaactcgttgatcaactccgcttggggaaa
tgaggagcgtgaaggaaaaatgccatttgagaaggctgttggatttgatttggagatcca
taacgagccatacgcattcgcggtcaccgtgaacggagaacgtttcgcatcgtatgctca
ccgtctcagtcctgatgaggtcaatggactccaaatcggaggagacgttgagatcaccgg
aatccaactcgcctaaatgttgcccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTACGAGCATCGTGTGCCACTC 47 515 405 Antisense
TCACACACTTCACTATCGACGGAGA 88 627 437 Antisense
GCCCCAGGCAAGACTCTTACTGTCT 601 285 541 Antisense
GATATTGCTCTTCATCTTAACGCTC 400 427 625 Antisense
ATGAGAAGCACGTCGTTCGCAACTC 666 43 656 Antisense
CAACTCGTTGATCAACTCCGCTTGG 238 189 675 Antisense
GATCCATAACGAGCCATACGCATTC 87 417 759 Antisense
CGCATTCGCGGTCACCGTGAACGGA 508 253 777 Antisense
GGAGAACGTTTCGCATCGTATGCTC 345 519 799 Antisense
CTCACCGTCTCAGTCCTGATGAGGT 43 229 821 Antisense
CCAACTCGCCTAAATGTTGCCCATT 485 275 888 Antisense
Sequence Source GenBank