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[194234_x_at]

Description C57655_rc /REP_DB=TREMBL Accession /GB=C57655 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk309b12 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 10
(-3)
A 		21.8
(-2)
A 		17.3
(-2.4)
A 		82.7
(3)
A 		73
B 10.4
(-3)
A 		34.3
(-1.7)
A 		27.2
(-2.1)
A 		120.8
(3)
A 		110
C 18.4
(-2.1)
A 		21.2
(-1.3)
A 		35.9
(3)
A 		15.3
(-3)
A 		21
avr 12.9
(-3) 		25.8
(-1.7) 		26.8
(-1.6) 		72.9
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2389
1 2 3 4 5 6 range
A 41.5
(-3)
A 		48.1
(-3)
A 		58.2
(-3)
A 		49.7
(-3)
A 		2396.2
(3)
P 		1871.7
(1.7)
P 		2355
B 26.8
(-2.9)
A 		8.4
(-3)
A 		14.1
(-3)
A 		36.7
(-2.9)
A 		2173.8
(3)
P 		1489.5
(1.1)
P 		2165
C 7.1
(-3)
A 		9.3
(-3)
A 		58.5
(-2.9)
A 		16.5
(-3)
A 		2384
(3)
P 		1619.7
(1.1)
P 		2377
avr 25.1
(-3) 		21.9
(-3) 		43.6
(-2.9) 		34.3
(-3) 		2318
(3) 		1660.3
(1.3) 		2296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 3.6
(-3)
A 		4.7
(-2.2)
A 		4.5
(-2.4)
A 		12.1
(3)
A 		9
B 3.3
(-3)
A 		8.5
(-1.6)
A 		6.3
(-2.2)
A 		25.7
(3)
A 		22
C 6.1
(-0.9)
A 		6.1
(-0.9)
A 		12.5
(3)
A 		2.6
(-3)
A 		10
avr 4.3
(-3) 		6.4
(-1.6) 		7.8
(-0.7) 		13.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 881
1 2 3 4 5 6 range
A 7.7
(-3)
A 		17.1
(-2.9)
A 		12.7
(-3)
A 		12.6
(-3)
A 		723.1
(3)
P 		455.7
(0.8)
P 		715
B 9.3
(-3)
A 		2.8
(-3)
A 		3.4
(-3)
A 		9.7
(-3)
A 		883.2
(3)
P 		555.4
(0.8)
P 		880
C 2.6
(-3)
A 		2.8
(-3)
A 		14.9
(-2.9)
A 		3.3
(-3)
A 		771.4
(3)
P 		542.2
(1.2)
P 		769
avr 6.5
(-3) 		7.6
(-3) 		10.3
(-3) 		8.5
(-3) 		792.6
(3) 		517.8
(0.9) 		786
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194234_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22174
Sequence Type Exemplar sequence
Representative Public ID C57655 NCBI
Target Description C57655_rc /REP_DB=TREMBL Accession /GB=C57655 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk309b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077585(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077585 NCBI Caenorhabditis elegans Y62H9A.5 (Y62H9A.5) mRNA, complete cds. 9/11 A 
SNAP00000025457 ENSEMBL cdna:SNAP chromosome:CEL140:X:11882114:11882803:-1 9/11 None
GENEFINDER00000025469 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11882114:11882803:-1 9/11 None
Y62H9A.5 ENSEMBL cdna:known chromosome:CEL140:X:11882068:11882838:-1 gene:Y62H9A.5 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11882141-11882464(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.5
Entrez Gene 181364 Entrez gene
SwissProt Q9XWS6 EMBL-EBI
WormBase CE31124 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21569 Hypothetical protein Y62H9A.5 [Caenorhabditis elegans] ref|NP_509986.2| Y62H9A.5 [Caenorhabditis elegans] 3.0E-65
blast CAE69409 Hypothetical protein CBG15571 [Caenorhabditis briggsae] 2.0E-34
blast CAA21560 Hypothetical protein Y62H9A.3 [Caenorhabditis elegans] ref|NP_509984.1| Y62H9A.3 [Caenorhabditis elegans] 7.0E-27
Sequence
Target Sequence 
>C. ELEGANS:194234_X_AT
aaaccaatgtcgttgatgccagatattgcagatactacaagcatagaggagattattatg
cagaaattagctgcccacgacaatcagacaacaagaaatacacatggatccttgccgact
ctgatgaaaaattccatcatttggtattgatggaactgttgctcttgccgccggactcaa
tgtgagatatgttgctaaatactctcgccacggaaaatggtccggccgcgatatgacaaa
cagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCAATGTCGTTGATGCCAGATA 393 125 13 Antisense
GATGCCAGATATTGCAGATACTACA 512 415 27 Antisense
TTAGCTGCCCACGACAATCAGACAA 6 683 79 Antisense
GAAATACACATGGATCCTTGCCGAC 473 363 107 Antisense
GATCCTTGCCGACTCTGATGAAAAA 21 417 119 Antisense
ATTGATGGAACTGTTGCTCTTGCCG 455 3 158 Antisense
CTCTTGCCGCCGGACTCAATGTGAG 654 229 174 Antisense
ATATGTTGCTAAATACTCTCGCCAC 455 21 199 Antisense
TGCTAAATACTCTCGCCACGGAAAA 549 559 205 Antisense
GCCACGGAAAATGGTCCGGCCGCGA 264 279 219 Antisense
TCCGGCCGCGATATGACAAACAGTG 298 593 233 Antisense
Sequence Source Affymetrix Proprietary Database