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[194232_x_at]

Description C67036 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK1151.2B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C67036 /WB_GENE_ID=ZK1151.2B /WP=CE28425 /CHR=1 /FEA=Genomic Cluster /DEF=Spectrin repeat (16 domains); C.elegans cDNA clone yk235h7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 15      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 40      6grp_total > 05      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 739.8
(3)
P 		438.2
(-3)
P 		540.6
(-1)
P 		573.6
(-0.3)
P 		302
B 675
(3)
P 		503.9
(-1.9)
P 		464.5
(-3)
P 		596.6
(0.8)
P 		211
C 687.1
(3)
P 		551.6
(-0.4)
P 		516.3
(-1.3)
P 		448.1
(-3)
P 		239
avr 700.6
(3) 		497.9
(-3) 		507.1
(-2.7) 		539.4
(-1.8) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 524
1 2 3 4 5 6 range
A 873.8
(3)
P 		700.7
(0.8)
P 		404.2
(-3)
P 		521.3
(-1.5)
P 		533.2
(-1.4)
P 		523
(-1.5)
P 		470
B 765.4
(3)
P 		746.8
(2.7)
P 		436.1
(-2.7)
P 		620.8
(0.5)
P 		418.3
(-3)
P 		461.1
(-2.3)
P 		347
C 786.2
(3)
P 		609.4
(0.6)
P 		568.6
(0)
P 		454.7
(-1.6)
P 		631.1
(0.9)
P 		350.3
(-3)
P 		436
avr 808.5
(3) 		685.6
(1) 		469.6
(-2.6) 		532.3
(-1.6) 		527.5
(-1.6) 		444.8
(-3) 		364
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 269.4
(3)
P 		95.1
(-2.6)
P 		141.3
(-1.1)
P 		84
(-3)
P 		185
B 215.3
(3)
P 		124.5
(-2.1)
P 		107.6
(-3)
P 		127.1
(-1.9)
P 		108
C 227.4
(3)
P 		158.6
(0.3)
P 		179.9
(1.1)
P 		75.6
(-3)
P 		152
avr 237.4
(3) 		126.1
(-1.7) 		142.9
(-1) 		95.6
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 161.1
(-0.3)
P 		249.2
(3)
P 		88
(-3)
P 		132.2
(-1.4)
P 		160.9
(-0.3)
P 		127.3
(-1.5)
P 		161
B 266.3
(3)
P 		248.6
(2.3)
P 		105.9
(-3)
P 		164.4
(-0.8)
P 		169.9
(-0.6)
P 		171.9
(-0.5)
P 		160
C 291.4
(3)
P 		185.9
(-0.2)
P 		144.7
(-1.4)
P 		91.4
(-3)
P 		204.2
(0.4)
P 		117.3
(-2.2)
P 		200
avr 239.6
(3) 		227.9
(2.4) 		112.9
(-3) 		129.3
(-2.2) 		178.3
(0.1) 		138.8
(-1.8) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194232_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23135
Sequence Type Exemplar sequence
Representative Public ID C67036 NCBI
Target Description C67036 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK1151.2B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C67036 /WB_GENE_ID=ZK1151.2B /WP=CE28425 /CHR=1 /FEA=Genomic Cluster /DEF=Spectrin repeat (16 domains); C.elegans cDNA clone yk235h7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026683(11), NM_001026684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026683 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
NM_001026684 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
ZK1151.1b ENSEMBL cdna:known chromosome:CEL140:I:11755550:11800240:-1 gene:ZK1151.1 11/11 A 
ZK1151.1c ENSEMBL cdna:known chromosome:CEL140:I:11755565:11800188:-1 gene:ZK1151.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026688 8/11 Cross Hyb Matching Probes None
ZK1151.1g 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173058 7 2 NM_001026682 175291_at (11), 182228_s_at (11)
NM_001026683 191942_s_at (11), 194232_x_at (11)
NM_001026684 191942_s_at (11), 194232_x_at (11)
NM_001026685 182228_s_at (11)
NM_001026686 175291_at (11), 182228_s_at (11)
NM_001026687 182228_s_at (11)
NM_001026688 191942_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11755506-11768596(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1151.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD90183 Hypothetical protein ZK1151.1b [Caenorhabditis elegans] emb|CAD90187.2| Hypothetical protein ZK1151.1b [Caenorhabditis elegans] emb|CAD90176.2| Hypothetical protein ZK1151.1b [Caenorhabditis elegans] emb|CAD44324.1| VAB-10B protein [Caenorhabditis elegans] ref|NP_001021854.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 0.0
blast CAD90184 Hypothetical protein ZK1151.1c [Caenorhabditis elegans] emb|CAD90188.2| Hypothetical protein ZK1151.1c [Caenorhabditis elegans] emb|CAD90177.2| Hypothetical protein ZK1151.1c [Caenorhabditis elegans] ref|NP_001021855.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 0.0
blast CAD44516 VAB-10B protein [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 4.69999980926514
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 1.60000002384186
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 4.59999990463257
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 1.5
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 5.8E-34
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.6E-34
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.45
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.067
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0011
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.1E-6
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.0E-7
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.12
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.2E-5
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.027
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0014
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.5E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.1E-6
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.2E-18
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.4E-7
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.16
Pfam IPR002017 EMBL-EBI Spectrin repeat 5.4E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.0E-7
Pfam IPR003108 EMBL-EBI Growth-arrest-specific protein 2 5.0E-37
Pfam IPR003108 EMBL-EBI Growth-arrest-specific protein 2 5.0E-37
Sequence
Target Sequence 
>C. ELEGANS:194232_X_AT
tcggcggtacagctggctatacggttaccactgattcgcatagacacactgacgctcgcc
catccagaattccacgtgctccatcggacatgagcgctgggcgcctgagccgtgtcggaa
gtgtctccaactcgaaaaactcgatcgtcgactcgtcgacaccttcccgaccagaatccc
gagcctcttcggatgctggagaccgacaaacgaggattccctcgttgagagcacgtaaag
gacaaagatatatcccacaaggaccatcatcatcgtcttcaaagtgatttaattgattcg
atttaattttttttcctatgtttttgaatgattttacttttttttttcttaattttttaa
tatgtacccccacccctttccccccaaaaaattatccagtttttcccggcctacagttgc
gcgcccccatcacgtcatcttgggttactgtagctgggattactgggctctttccaccca
aaaaaaaactgatttttctagacaccggtacccccatctctctttttgtgaatatcatca
tttccgatttttcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGCGGTACAGCTGGCTATACGGT 507 605 10113 Antisense
TATACGGTTACCACTGATTCGCATA 144 655 10130 Antisense
GATTCGCATAGACACACTGACGCTC 392 433 10145 Antisense
CTCCATCGGACATGAGCGCTGGGCG 81 235 10191 Antisense
GTGTCGGAAGTGTCTCCAACTCGAA 350 487 10224 Antisense
AAAACTCGATCGTCGACTCGTCGAC 315 131 10248 Antisense
GGATTCCCTCGTTGAGAGCACGTAA 470 507 10326 Antisense
CAAGGACCATCATCATCGTCTTCAA 685 183 10370 Antisense
CATCACGTCATCTTGGGTTACTGTA 463 211 10540 Antisense
TAGCTGGGATTACTGGGCTCTTTCC 543 651 10563 Antisense
ATATCATCATTTCCGATTTTTCCCC 666 19 10644 Antisense
Sequence Source Affymetrix Proprietary Database