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[194231_x_at]

Description CEK031D2R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0334.3A /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33464 /WB_GENE_ID=B0334.3A /WP=CE19658 /CHR=2 /FEA=Genomic Cluster /DEF=oxalyl-CoA decarboxylase; C.elegans cDNA clone yk31d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 28      4grp_high_8_8 > 0      6grp_highest_nonorm > 05      6grp_total > 06      4grp_total > 07      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3145
1 2 3 4 range
A 6428
(-0.3)
P 		5404.9
(-3)
P 		7671.2
(3)
P 		6125.2
(-1.1)
P 		2266
B 6468.4
(3)
P 		4792.7
(-3)
P 		6030.3
(1.4)
P 		6218.4
(2.1)
P 		1676
C 5910.7
(2.8)
P 		4526.4
(-3)
P 		5963.7
(3)
P 		5682.6
(1.8)
P 		1437
avr 6269
(2) 		4908
(-3) 		6555.1
(3) 		6008.7
(1) 		1647

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8877
1 2 3 4 5 6 range
A 12845.5
(3)
P 		7145.6
(-1.2)
P 		4748.7
(-3)
P 		4963.1
(-2.8)
P 		4759.1
(-3)
P 		5644.8
(-2.3)
P 		8097
B 9669.1
(3)
P 		7146.5
(0.2)
P 		4477.4
(-2.7)
P 		4347.7
(-2.8)
P 		4920.4
(-2.2)
P 		4177.8
(-3)
P 		5491
C 9289.3
(3)
P 		7285.7
(0.7)
P 		6154.9
(-0.5)
P 		4308.8
(-2.6)
P 		4921.4
(-1.9)
P 		3968.1
(-3)
P 		5321
avr 10601.3
(3) 		7192.6
(-0.4) 		5127
(-2.4) 		4539.9
(-3) 		4867
(-2.7) 		4596.9
(-2.9) 		6061
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1444
1 2 3 4 range
A 2340.4
(3)
P 		1173.3
(-1.9)
P 		2005.4
(1.6)
P 		896.6
(-3)
P 		1444
B 2062.7
(3)
P 		1183.7
(-3)
P 		1397.4
(-1.5)
P 		1325.1
(-2)
P 		879
C 1956.6
(2.3)
P 		1301.4
(-1.2)
P 		2078.5
(3)
P 		958.2
(-3)
P 		1120
avr 2119.9
(3) 		1219.5
(-2.1) 		1827.1
(1.3) 		1060
(-3) 		1060

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2577
1 2 3 4 5 6 range
A 2368
(2.3)
P 		2541.3
(3)
P 		1034.2
(-3)
P 		1258.8
(-2.1)
P 		1436.1
(-1.4)
P 		1374.3
(-1.6)
P 		1507
B 3364.4
(3)
P 		2378.8
(0.4)
P 		1087.3
(-3)
P 		1151.6
(-2.8)
P 		1999.1
(-0.6)
P 		1557.9
(-1.8)
P 		2277
C 3443.2
(3)
P 		2223.1
(0.2)
P 		1566.5
(-1.4)
P 		866.5
(-3)
P 		1592.5
(-1.3)
P 		1328.4
(-1.9)
P 		2577
avr 3058.5
(3) 		2381.1
(0.9) 		1229.3
(-2.6) 		1092.3
(-3) 		1675.9
(-1.2) 		1420.2
(-2) 		1966
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194231_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23177
Sequence Type Exemplar sequence
Representative Public ID CEK031D2R NCBI
Target Description CEK031D2R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0334.3A /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33464 /WB_GENE_ID=B0334.3A /WP=CE19658 /CHR=2 /FEA=Genomic Cluster /DEF=oxalyl-CoA decarboxylase; C.elegans cDNA clone yk31d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064054(11), NM_064053(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064054 NCBI Caenorhabditis elegans B0334.3b (B0334.3) mRNA, complete cds. 11/11 A 
NM_064053 NCBI Caenorhabditis elegans B0334.3a (B0334.3) mRNA, complete cds. 11/11 A 
SNAP00000019013 ENSEMBL cdna:SNAP chromosome:CEL140:II:11489613:11492868:-1 11/11 None
GENEFINDER00000019033 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11489613:11492868:-1 11/11 None
B0334.3b ENSEMBL cdna:known chromosome:CEL140:II:11489520:11492539:-1 gene:B0334.3 11/11 A 
B0334.3a.1 ENSEMBL cdna:known chromosome:CEL140:II:11489613:11492926:-1 gene:B0334.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11489527-11492866(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0334.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91372 Hypothetical protein B0334.3b [Caenorhabditis elegans] ref|NP_496455.1| B0334.3b [Caenorhabditis elegans] 0.0
blast CAA91381 Hypothetical protein B0334.3a [Caenorhabditis elegans] ref|NP_496454.1| B0334.3a [Caenorhabditis elegans] 0.0
blast CAE59489 Hypothetical protein CBG02874 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000399 EMBL-EBI Pyruvate decarboxylase 2.8E-28
Pfam IPR000399 EMBL-EBI Pyruvate decarboxylase 4.5E-46
Sequence
Target Sequence 
>C. ELEGANS:194231_X_AT
gatatcggccgaaccatgatgccttcccgtctcccgaagcgtcgcctcgacgccggaacc
tttggaacaatgggagtcggtcatggattctccctcgccgccgcactctgggcaagagat
cacagtccgaagactaaggttctcgtggttcaaggagacagtgctttcggattctctgcc
atggaactcgagacaattgctcgatacaatcttccagtcgtcactgttatcattaacaac
tctggaatctatcgtggactcctgccagaagatgataaggcaatcgaaggagaccgtact
cttgctcttccagttctctcgctaactgctgaatgtcgttatgaagaaatgtgcaaagct
ttcggaggagctggaactgttgttagaactgttccagaaatcaaggcagctctcgagaag
gcattccaaaaaaccgacggaccaactgttatcaatgctctcatctcaacagattcggag
agaaaaccacaagctgatcattggttgactcgctcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATCGGCCGAACCATGATGCCTT 317 425 1394 Antisense
TCGACGCCGGAACCTTTGGAACAAT 643 595 1440 Antisense
GGGAGTCGGTCATGGATTCTCCCTC 190 495 1465 Antisense
TCGGATTCTCTGCCATGGAACTCGA 41 605 1560 Antisense
GATACAATCTTCCAGTCGTCACTGT 335 423 1596 Antisense
TCTATCGTGGACTCCTGCCAGAAGA 269 615 1641 Antisense
TCGAAGGAGACCGTACTCTTGCTCT 666 595 1677 Antisense
GTTCTCTCGCTAACTGCTGAATGTC 521 443 1706 Antisense
AGGCAGCTCTCGAGAAGGCATTCCA 112 55 1797 Antisense
GGACCAACTGTTATCAATGCTCTCA 345 523 1832 Antisense
CTGATCATTGGTTGACTCGCTCGAA 258 237 1887 Antisense
Sequence Source Affymetrix Proprietary Database