[Home] | [Total List]

[194227_x_at]

Description C36026_rc /REP_DB=TREMBL Accession /GB=C36026 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk453b8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 75      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 82      6grp_total > 65      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 365.9
(0.1)
P 		248.6
(-3)
P 		287.3
(-2)
P 		476.6
(3)
P 		228
B 419.8
(0.9)
P 		322.9
(-3)
P 		380.6
(-0.7)
P 		471.8
(3)
P 		149
C 403.5
(0.1)
P 		368.9
(-0.8)
P 		282.7
(-3)
P 		519
(3)
P 		236
avr 396.4
(-0.2) 		313.5
(-3) 		316.9
(-2.9) 		489.1
(3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 290
(-1.7)
P 		294.4
(-1.6)
P 		427.5
(3)
P 		253
(-3)
P 		329
(-0.4)
P 		382.3
(1.4)
P 		175
B 330.1
(-1.1)
P 		290
(-3)
P 		349.7
(-0.1)
P 		413.6
(3)
P 		336.7
(-0.7)
P 		389.2
(1.8)
P 		124
C 311.4
(-2.1)
P 		327.5
(-1.6)
P 		301.4
(-2.5)
P 		372.6
(-0.2)
P 		284.3
(-3)
P 		472.3
(3)
P 		188
avr 310.5
(-2.6) 		304
(-3) 		359.5
(0) 		346.4
(-0.7) 		316.7
(-2.3) 		414.6
(3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 133.2
(3)
P 		54
(-3)
P 		75.1
(-1.4)
P 		69.8
(-1.8)
P 		79
B 133.9
(3)
P 		79.7
(-3)
P 		88.2
(-2.1)
P 		100.5
(-0.7)
P 		54
C 133.6
(3)
P 		106
(-0.6)
P 		98.5
(-1.6)
P 		87.5
(-3)
P 		46
avr 133.6
(3) 		79.9
(-3) 		87.3
(-2.2) 		85.9
(-2.3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 53.5
(-3)
P 		104.7
(3)
P 		93.1
(1.6)
P 		64.2
(-1.7)
P 		99.3
(2.4)
P 		93.1
(1.6)
P 		51
B 114.8
(-0)
P 		96.5
(-1.8)
P 		84.9
(-3)
P 		109.6
(-0.5)
P 		136.8
(2.2)
P 		145.1
(3)
P 		60
C 115.4
(-0.1)
P 		99.9
(-1.2)
P 		76.7
(-2.9)
P 		74.9
(-3)
P 		92
(-1.8)
P 		158.1
(3)
P 		83
avr 94.6
(-1.6) 		100.4
(-0.9) 		84.9
(-2.8) 		82.9
(-3) 		109.4
(0.2) 		132.1
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194227_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20954
Sequence Type Exemplar sequence
Representative Public ID C36026 NCBI
Target Description C36026_rc /REP_DB=TREMBL Accession /GB=C36026 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk453b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065661 NCBI Caenorhabditis elegans R144.6 (R144.6) mRNA, complete cds. 11/11 None
SNAP00000019420 ENSEMBL cdna:SNAP chromosome:CEL140:III:5001433:5004682:-1 10/11 None
GENEFINDER00000019432 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5001433:5004682:-1 10/11 None
R144.6 ENSEMBL cdna:known chromosome:CEL140:III:5003226:5004683:-1 gene:R144.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5003234-5003514(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R144.6
Entrez Gene 175678 Entrez gene
SwissProt Q10000 EMBL-EBI
WormBase CE37549 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.13700.1.S1_AT hypothetical LOC482668 cfa
HG-U133_PLUS_2:228624_AT hypothetical protein FLJ11155 hs
HG-U133B:228624_AT hypothetical protein FLJ11155 hs
HG-U133_PLUS_2:219750_AT hypothetical protein FLJ11155 hs
HG-U133A:219750_AT hypothetical protein FLJ11155 hs
HG-U133A_2:219750_AT hypothetical protein FLJ11155 hs
HU35KSUBC:RC_N62499_AT hypothetical protein FLJ11155 hs
U133_X3P:G8922902_3P_X_AT hypothetical protein FLJ11155 hs
U133_X3P:G8922902_3P_A_AT hypothetical protein FLJ11155 hs
U133_X3P:HS2.379430.1.S1_3P_AT hypothetical protein FLJ11155 hs
U133_X3P:HS.271356.0.A1_3P_AT hypothetical protein FLJ11155 hs
U133_X3P:HS.176227.1.A1_3P_AT hypothetical protein FLJ11155 hs
HG-U133_PLUS_2:1558452_AT hypothetical protein FLJ11155 hs
HG-U133A_2:217613_AT hypothetical protein FLJ11155 hs
HG-U133_PLUS_2:217613_AT hypothetical protein FLJ11155 hs
HG-U133A:217613_AT hypothetical protein FLJ11155 hs
HG-U95C:62147_AT hypothetical protein FLJ11155 hs
HG-U95E:84877_AT hypothetical protein FLJ11155 hs
U133_X3P:HS2.385469.1.S1_3P_AT Hypothetical protein FLJ11155 hs
HG-U133_PLUS_2:1562608_AT Hypothetical protein FLJ11155 hs
MG-U74BV2:163061_AT RIKEN cDNA 5730537D05 gene mm
MOE430A:1456583_X_AT RIKEN cDNA 5730537D05 gene mm
MOUSE430A_2:1456583_X_AT RIKEN cDNA 5730537D05 gene mm
MOUSE430_2:1456583_X_AT RIKEN cDNA 5730537D05 gene mm
MOE430A:1426362_AT RIKEN cDNA 5730537D05 gene mm
MOUSE430A_2:1426362_AT RIKEN cDNA 5730537D05 gene mm
MOUSE430_2:1426362_AT RIKEN cDNA 5730537D05 gene mm
MOE430A:1452042_A_AT RIKEN cDNA 5730537D05 gene mm
MOUSE430A_2:1452042_A_AT RIKEN cDNA 5730537D05 gene mm
MOUSE430_2:1452042_A_AT RIKEN cDNA 5730537D05 gene mm
MU19KSUBB:TC32950_AT RIKEN cDNA 5730537D05 gene (5730537D05Rik), mRNA mm
Protein Similarities
Method ID Description E-Value
blast T16753 hypothetical protein R144.6 - Caenorhabditis elegans 0.0
blast NP_498062 R144.6 [Caenorhabditis elegans] gb|AAU87817.1| Hypothetical protein R144.6 [Caenorhabditis elegans] sp|Q10000|YRR6_CAEEL Hypothetical protein R144.6 in chromosome III 1.0E-179
blast NP_498062 R144.6 [Caenorhabditis elegans] gb|AAU87817.1| Hypothetical protein R144.6 [Caenorhabditis elegans] sp|Q10000|YRR6_CAEEL Hypothetical protein R144.6 in chromosome III 1.0E-176
blast NP_498062 R144.6 [Caenorhabditis elegans] gb|AAU87817.1| Hypothetical protein R144.6 [Caenorhabditis elegans] sp|Q10000|YRR6_CAEEL Hypothetical protein R144.6 in chromosome III 1.0E-164
blast CAE70087 Hypothetical protein CBG16528 [Caenorhabditis briggsae] 1.0E-160
blast CAE70087 Hypothetical protein CBG16528 [Caenorhabditis briggsae] 1.0E-157
blast CAE70087 Hypothetical protein CBG16528 [Caenorhabditis briggsae] 1.0E-147
blast T16753 hypothetical protein R144.6 - Caenorhabditis elegans 1.0E-141
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498062.2 9 2-24,34-56,69-91,116-138,193-215,230-252,265-287,292-314,326-343
R144.6 9 2-24,34-56,69-91,116-138,193-215,230-252,265-287,292-314,326-343
SNAP00000019420 7 5-24,33-55,70-92,166-188,203-225,238-256,266-288
GENEFINDER00000019432 8 2-24,34-56,69-91,116-138,193-215,230-252,265-283,293-315
Sequence
Target Sequence 
>C. ELEGANS:194227_X_AT
gctggatcaatgtggggaatcgcccaagcatcttggtttgtggcaaatgacaatttatca
caagccgtatcatttccaattatctcaatggttcccggagttattgctgcactatggagt
gtgttctacttccgtgacatttccggatcccgaaatctccgtcttctatctattgctgtc
gccatcacgttgattggagcgatttgtgtgggagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGATCAATGTGGGGAATCGCCC 560 293 24 Antisense
GGAATCGCCCAAGCATCTTGGTTTG 452 533 39 Antisense
GACAATTTATCACAAGCCGTATCAT 111 365 72 Antisense
AGCCGTATCATTTCCAATTATCTCA 560 83 86 Antisense
AATTATCTCAATGGTTCCCGGAGTT 500 175 101 Antisense
TTCCCGGAGTTATTGCTGCACTATG 622 695 115 Antisense
CTATGGAGTGTGTTCTACTTCCGTG 569 223 135 Antisense
TACTTCCGTGACATTTCCGGATCCC 555 643 150 Antisense
TGACATTTCCGGATCCCGAAATCTC 381 571 158 Antisense
CTGTCGCCATCACGTTGATTGGAGC 461 239 199 Antisense
GATTGGAGCGATTTGTGTGGGAGTT 463 435 215 Antisense
Sequence Source Affymetrix Proprietary Database