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[194219_x_at] beta transducin

Description C34021_rc /REP_DB=TREMBL Accession /GB=C34021 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk391c10 : 3prime end, single read.
Cluster 4grp_high_8_8 > 22      6grp_total > 97      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 78.7
(-3)
P 		133.5
(-0.9)
P 		136.3
(-0.7)
P 		232.2
(3)
P 		154
B 92.6
(-3)
P 		148.2
(-0.1)
P 		105
(-2.4)
P 		208.7
(3)
P 		116
C 97.8
(-3)
M 		130.3
(-1.6)
P 		151.3
(-0.6)
P 		232.5
(3)
P 		135
avr 89.7
(-3) 		137.3
(-0.9) 		130.9
(-1.2) 		224.5
(3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 498
1 2 3 4 5 6 range
A 56.9
(-3)
A 		103
(-2.4)
M 		91.4
(-2.5)
P 		195.8
(-1.1)
P 		316.3
(0.5)
P 		497.7
(3)
P 		441
B 57
(-3)
A 		83.4
(-2.6)
P 		121.9
(-2.1)
P 		164.2
(-1.5)
P 		333.5
(1)
P 		475.1
(3)
P 		418
C 74.4
(-3)
A 		115.4
(-2.5)
P 		142.1
(-2.2)
P 		136.1
(-2.2)
P 		309.8
(-0.1)
P 		554.9
(3)
P 		481
avr 62.8
(-3) 		100.6
(-2.5) 		118.5
(-2.3) 		165.4
(-1.6) 		319.9
(0.5) 		509.2
(3) 		446
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 28.6
(-3)
P 		29
(-2.7)
P 		35.6
(3)
P 		34
(1.6)
P 		7
B 29.5
(-1.5)
P 		36.6
(0.7)
P 		24.3
(-3)
P 		44.5
(3)
P 		20
C 32.4
(-3)
M 		37.5
(-1.5)
P 		52.7
(3)
P 		39.2
(-1)
P 		20
avr 30.2
(-3) 		34.4
(-0.2) 		37.5
(1.9) 		39.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 10.5
(-3)
A 		36.6
(-1.6)
M 		19.9
(-2.5)
P 		49.6
(-0.9)
P 		95.4
(1.6)
P 		121.2
(3)
P 		111
B 19.8
(-3)
A 		27.7
(-2.7)
P 		29.6
(-2.6)
P 		43.5
(-2.1)
P 		135.5
(1.4)
P 		177.2
(3)
P 		157
C 27.6
(-3)
A 		35.2
(-2.7)
P 		36.2
(-2.7)
P 		27.4
(-3)
P 		100.2
(-0.2)
P 		185.8
(3)
P 		158
avr 19.3
(-3) 		33.2
(-2.4) 		28.6
(-2.6) 		40.2
(-2.1) 		110.4
(0.8) 		161.4
(3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194219_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20353
Sequence Type Exemplar sequence
Representative Public ID C34021 NCBI
Target Description C34021_rc /REP_DB=TREMBL Accession /GB=C34021 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk391c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058924(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058924 NCBI Caenorhabditis elegans C18E3.5 (C18E3.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000003667 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4195598:4203173:1 11/11 None
C18E3.5 ENSEMBL cdna:known chromosome:CEL140:I:4193243:4203293:1 gene:C18E3.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003656 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4197109-4203234(+) 100.0 100.0
Public Domain and Genome References
Gene Title beta transducin
Ensembl C18E3.5
Entrez Gene 172015 Entrez gene
SwissProt O02097 EMBL-EBI
WormBase CE27713 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68197 Hypothetical protein C18E3.5 [Caenorhabditis elegans] ref|NP_491325.1| C18E3.5 [Caenorhabditis elegans] 0.0
blast T15181 hypothetical protein C18E3.5 - Caenorhabditis elegans 1.0E-178
blast CAE66746 Hypothetical protein CBG12096 [Caenorhabditis briggsae] 1.0E-132
blast AAK68197 Hypothetical protein C18E3.5 [Caenorhabditis elegans] ref|NP_491325.1| C18E3.5 [Caenorhabditis elegans] 1.0E-103
blast T15181 hypothetical protein C18E3.5 - Caenorhabditis elegans 4.0E-92
blast CAE70667 Hypothetical protein CBG17375 [Caenorhabditis briggsae] 1.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.6E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.1E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.017
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.5E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0044
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.017
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.5E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0044
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-7
Sequence
Target Sequence 
>C. ELEGANS:194219_X_AT
tctgcggatcgtttcgtctatgtttggaatgcaaaatcgcgtgcatgtgtctataaactt
cctggacatcttggttccgtcaactgcactgctcttcatccaactcaacagattcttctc
tctgctggaagcgacaagaccattttcctcggagaactcgacctggaggattatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCGGATCGTTTCGTCTATGTTT 1 609 55 Antisense
GCAAAATCGCGTGCATGTGTCTATA 414 317 85 Antisense
TGCATGTGTCTATAAACTTCCTGGA 306 579 96 Antisense
TTCCTGGACATCTTGGTTCCGTCAA 100 699 113 Antisense
TGCTCTTCATCCAACTCAACAGATT 336 581 144 Antisense
AACTCAACAGATTCTTCTCTCTGCT 328 141 156 Antisense
GATTCTTCTCTCTGCTGGAAGCGAC 565 431 165 Antisense
GAAGCGACAAGACCATTTTCCTCGG 31 343 182 Antisense
GACCATTTTCCTCGGAGAACTCGAC 558 383 192 Antisense
TTTCCTCGGAGAACTCGACCTGGAG 429 669 198 Antisense
GAGAACTCGACCTGGAGGATTATTA 237 389 206 Antisense
Sequence Source Affymetrix Proprietary Database