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[194218_x_at] claustrin like

Description AV203404 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F25D7.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203404 /WB_GENE_ID=F25D7.4 /WP=CE09632 /CHR=1 /FEA=Genomic Cluster /DEF=claustrin like; Caenorhabditis elegans cDNA clone:yk576a11 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 38      6grp_total > 98      4grp_total > 41      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 132.9
(-3)
M 		209.4
(1.9)
P 		177.1
(-0.2)
P 		227.4
(3)
P 		95
B 100.6
(-3)
P 		209.1
(0.1)
P 		313.3
(3)
P 		170.9
(-1)
M 		213
C 134.7
(-3)
P 		264.2
(3)
P 		227.1
(1.3)
P 		156.6
(-2)
A 		130
avr 122.7
(-3) 		227.6
(2.4) 		239.2
(3) 		185
(0.2) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 936
1 2 3 4 5 6 range
A 168.6
(-2.8)
A 		160.4
(-2.8)
P 		135.5
(-3)
P 		240.5
(-2.3)
P 		606.1
(0.3)
P 		1003.4
(3)
P 		868
B 124.9
(-3)
A 		163.5
(-2.6)
M 		258.6
(-1.7)
P 		315.7
(-1.2)
P 		598.1
(1.4)
P 		763.8
(3)
P 		639
C 148.2
(-2.3)
P 		67.8
(-3)
A 		187.3
(-1.9)
P 		212.1
(-1.7)
P 		726.1
(3)
P 		560.9
(1.5)
P 		658
avr 147.2
(-2.8) 		130.6
(-3) 		193.8
(-2.4) 		256.1
(-1.8) 		643.4
(1.8) 		776
(3) 		645
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 48.4
(3)
M 		45.4
(1.8)
P 		46.3
(2.2)
P 		33.3
(-3)
P 		15
B 32.1
(-3)
P 		51.6
(-0.1)
P 		72.6
(3)
P 		36.4
(-2.4)
M 		41
C 44.6
(-0.9)
P 		75.9
(2.6)
P 		79.1
(3)
P 		26.4
(-3)
A 		53
avr 41.7
(-1.3) 		57.6
(1.5) 		66
(3) 		32
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 31.1
(-3)
A 		57
(-2.2)
P 		29.5
(-3)
P 		61
(-2.1)
P 		182.9
(1.3)
P 		244.3
(3)
P 		215
B 43.5
(-3)
A 		54.4
(-2.7)
M 		62.8
(-2.5)
P 		83.6
(-2)
P 		243
(2)
P 		284.8
(3)
P 		241
C 54.9
(-2)
P 		20.7
(-3)
A 		47.7
(-2.2)
P 		42.7
(-2.4)
P 		235
(3)
P 		187.8
(1.7)
P 		214
avr 43.2
(-3) 		44
(-3) 		46.7
(-2.9) 		62.4
(-2.4) 		220.3
(2.4) 		239
(3) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194218_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22767
Sequence Type Exemplar sequence
Representative Public ID AV203404 NCBI
Target Description AV203404 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F25D7.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203404 /WB_GENE_ID=F25D7.4 /WP=CE09632 /CHR=1 /FEA=Genomic Cluster /DEF=claustrin like; Caenorhabditis elegans cDNA clone:yk576a11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060323 NCBI Caenorhabditis elegans F25D7.4 (F25D7.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000011706 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10426610:10429980:-1 9/11 None
F25D7.4 ENSEMBL cdna:known chromosome:CEL140:I:10426357:10430599:-1 gene:F25D7.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065377 7/11 Cross Hyb Matching Probes A 
NM_067920 6/11 Cross Hyb Matching Probes A 
SNAP00000011701 6/11 Cross Hyb Matching Probes None
SNAP00000028395 6/11 Cross Hyb Matching Probes None
GENEFINDER00000028407 7/11 Cross Hyb Matching Probes None
SNAP00000037840 3/11 Cross Hyb Matching Probes None
SNAP00000037841 2/11 Cross Hyb Matching Probes None
GENEFINDER00000037851 4/11 Cross Hyb Matching Probes None
GENEFINDER00000037857 3/11 Cross Hyb Matching Probes None
C36A4.5 7/11 Cross Hyb Matching Probes A 
F42A6.3 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3844250-3848439(+) 97.34 97.34
chrI:10426365-10430531(-) 100.0 100.0
Public Domain and Genome References
Gene Title claustrin like
Ensembl F25D7.4
Entrez Gene 172918 Entrez gene
SwissProt Q93562 EMBL-EBI
WormBase CE09632 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01697 Hypothetical protein F25D7.4 [Caenorhabditis elegans] ref|NP_492724.1| F25D7.4 [Caenorhabditis elegans] 0.0
blast CAA91271 Hypothetical protein C36A4.5 [Caenorhabditis elegans] ref|NP_497778.1| C36A4.5 [Caenorhabditis elegans] 0.0
blast CAB05498 Hypothetical protein F32A7.5a [Caenorhabditis elegans] ref|NP_001021436.1| F32A7.5a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:194218_X_AT
tgcctctcatccagaaaatctccacatgccagctgctccaggatccgtcgcctcagcgaa
gccagtcaaattcgcgcgtccatactatttcgacgtggtcacagtgccaaggaacgagaa
attggagacctccgttgaagcagacggtctgcaagagttcatctcaaaggtgcgctcgag
aaatgtgatcctcgcgtcgaaggaaatctccggagagcagctgcagtcgattctcagagg
aaagcaaacatggtgtgatcgtgctcatccatgcaacgtgatcccaacacattcctctcc
gatgctgcacgatttccgccagaagaacgaggagcaattcgccgcgaatcatctgcagtt
ttcaatgcccgtggagaagcagcggacgacagtgagctcggacgccggagtcgttgagta
tgatttggccagagtcgatttgctttaattgactgccaatcaatctcccaccatcgccac
caatctcccccactattttcctgtgaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTCTCATCCAGAAAATCTCCAC 30 585 2365 Antisense
CGAAGCCAGTCAAATTCGCGCGTCC 308 253 2421 Antisense
AGAGCAGCTGCAGTCGATTCTCAGA 656 69 2578 Antisense
ATCGTGCTCATCCATGCAACGTGAT 132 35 2622 Antisense
TGCAACGTGATCCCAACACATTCCT 441 577 2636 Antisense
GAACGAGGAGCAATTCGCCGCGAAT 19 349 2689 Antisense
GCCGCGAATCATCTGCAGTTTTCAA 491 285 2705 Antisense
GCAGCGGACGACAGTGAGCTCGGAC 331 313 2743 Antisense
CTCGGACGCCGGAGTCGTTGAGTAT 448 1 2761 Antisense
AATTGACTGCCAATCAATCTCCCAC 207 179 2811 Antisense
TCCCCCACTATTTTCCTGTGAATTT 351 597 2850 Antisense
Sequence Source Affymetrix Proprietary Database