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[194217_x_at]

Description CEK010EYR_rc /REP_DB=TREMBL Accession /GB=D32314 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10e11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 50      6grp_total > 28      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 387
1 2 3 4 range
A 706
(3)
P 		383.1
(-2)
P 		461.4
(-0.8)
P 		318.7
(-3)
P 		387
B 535.5
(3)
P 		393.2
(-3)
P 		392.7
(-3)
P 		516.8
(2.2)
P 		143
C 690
(3)
P 		469.6
(-1.2)
P 		487.8
(-0.8)
P 		374.4
(-3)
P 		316
avr 643.8
(3) 		415.3
(-2.7) 		447.3
(-1.9) 		403.3
(-3) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 442
1 2 3 4 5 6 range
A 825.1
(3)
P 		582.9
(-0.3)
P 		384.2
(-3)
P 		431.8
(-2.4)
P 		666.9
(0.8)
P 		601.3
(-0)
P 		441
B 826.5
(3)
P 		605.2
(-1.2)
P 		523.2
(-2.8)
P 		527.2
(-2.7)
P 		513.4
(-3)
P 		515.8
(-3)
P 		313
C 678.2
(3)
P 		524.1
(-1.1)
P 		467.1
(-2.6)
P 		451.6
(-3)
P 		536.1
(-0.8)
P 		542.6
(-0.6)
P 		227
avr 776.6
(3) 		570.7
(-0.9) 		458.2
(-3) 		470.2
(-2.8) 		572.1
(-0.9) 		553.2
(-1.2) 		318
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 257
(3)
P 		83.2
(-2)
P 		120.6
(-0.9)
P 		46.6
(-3)
P 		210
B 170.8
(3)
P 		97.1
(-2.5)
P 		91
(-3)
P 		110.1
(-1.6)
P 		80
C 228.4
(3)
P 		135
(-0.4)
P 		170
(0.9)
P 		63.1
(-3)
P 		165
avr 218.7
(3) 		105.1
(-1.7) 		127.2
(-0.8) 		73.3
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 152.1
(0.3)
P 		207.3
(3)
P 		83.7
(-3)
P 		109.5
(-1.7)
P 		201.3
(2.7)
P 		146.4
(0)
P 		124
B 287.6
(3)
P 		201.4
(-0.2)
P 		127.1
(-3)
P 		139.6
(-2.5)
P 		208.6
(0)
P 		192.3
(-0.6)
P 		161
C 251.4
(3)
P 		159.9
(-0.4)
P 		118.9
(-2)
P 		90.8
(-3)
P 		173.5
(0.1)
P 		181.6
(0.4)
P 		161
avr 230.4
(3) 		189.5
(1) 		109.9
(-3) 		113.3
(-2.8) 		194.5
(1.2) 		173.4
(0.2) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194217_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20306
Sequence Type Exemplar sequence
Representative Public ID CEK010EYR NCBI
Target Description CEK010EYR_rc /REP_DB=TREMBL Accession /GB=D32314 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059152(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059152 NCBI Caenorhabditis elegans B0261.1 (B0261.1) mRNA, complete cds. 10/11 A 
B0261.1.2 ENSEMBL cdna:known chromosome:CEL140:I:5263696:5268380:1 gene:B0261.1 10/11 None
B0261.1.1 ENSEMBL cdna:known chromosome:CEL140:I:5263697:5268380:1 gene:B0261.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040723 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5267634-5268359(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0261.1
Entrez Gene 172168 Entrez gene
SwissProt O01441 EMBL-EBI
WormBase CE29531 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1590939_AT similar to transcription factor-like nuclear regulator cfa
CANINE_2:CFA.11173.1.A1_S_AT similar to transcription factor-like nuclear regulator cfa
CANINE_2:CFAAFFX.12564.1.S1_AT similar to transcription factor-like nuclear regulator cfa
CHICKEN:GGAAFFX.1633.1.S1_AT similar to transcription factor-like nuclear regulator; putative transcription regulation nuclear protein; putative transcription factor-like nuclear regulator; TATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 1; ... gga
CHICKEN:GGAAFFX.1661.1.S1_AT similar to transcription factor-like nuclear regulator; putative transcription regulation nuclear protein; putative transcription factor-like nuclear regulator; TATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 1; ... gga
CHICKEN:GGAAFFX.1665.1.S1_AT similar to transcription factor-like nuclear regulator; putative transcription regulation nuclear protein; putative transcription factor-like nuclear regulator; TATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 1; ... gga
HG-U133_PLUS_2:226290_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HG-U133B:226290_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HG-U133_PLUS_2:224227_S_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HG-U133B:224227_S_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HG-U133_PLUS_2:231939_S_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HG-U133B:231939_S_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HU35KSUBB:RC_N67220_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HU35KSUBD:RC_H99837_S_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
U133_X3P:G11096172_3P_X_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
U133_X3P:G11096172_3P_A_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
U133_X3P:HS.272808.2.A1_3P_A_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
U133_X3P:HS.272808.1.A1_3P_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
HG-U95C:64887_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB hs
MG-U74BV2:106953_I_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
MG-U74BV2:111812_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
MG-U74BV2:106954_F_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
MOE430B:1434284_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
MOUSE430_2:1434284_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
MOE430B:1437919_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
MOUSE430_2:1437919_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB mm
RG-U34B:RC_AI059173_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB (predicted) rn
RG-U34B:RC_AA942714_AT B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52350 Hypothetical protein B0261.1 [Caenorhabditis elegans] ref|NP_491553.1| B0261.1 [Caenorhabditis elegans] 0.0
blast CAE67376 Hypothetical protein CBG12854 [Caenorhabditis briggsae] 1.0E-172
blast XP_535267 PREDICTED: similar to transcription factor-like nuclear regulator [Canis familiaris] 9.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 2.5E-4
Sequence
Target Sequence 
>C. ELEGANS:194217_X_AT
aagattccaccgaaagtagccacctcgtctacggttacttcttcctcagctccaagttcg
tcttcttcaacaactgtagccccagccatcaagccatcaactgctccaaaacctgcaatt
gcttctgcacggagaactgtaaagaaaccaaatacctggagcaagaagaaataaatgaat
tctgtgaattttagttccccaaacgtttttctagccgcctaccccgttattttacgactg
tcaaatctccattttctagtatcgattggtttttacgggttctcgaaccgagaacaataa
tctattgatgaactttaattaccttttatgtctgttgaccagtagatgcctcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATTCCACCGAAAGTAGCCACCT 206 155 22 Antisense
TCCAAGTTCGTCTTCTTCAACAACT 259 585 72 Antisense
CTTCTTCAACAACTGTAGCCCCAGC 140 221 83 Antisense
TCAAGCCATCAACTGCTCCAAAACC 329 631 110 Antisense
AAACCTGCAATTGCTTCTGCACGGA 406 125 130 Antisense
GAATTCTGTGAATTTTAGTTCCCCA 468 323 198 Antisense
TTTACGACTGTCAAATCTCCATTTT 551 673 252 Antisense
GTCAAATCTCCATTTTCTAGTATCG 568 463 261 Antisense
TCTAGTATCGATTGGTTTTTACGGG 270 607 276 Antisense
AATTACCTTTTATGTCTGTTGACCA 547 103 338 Antisense
GTCTGTTGACCAGTAGATGCCTCGC 558 471 351 Antisense
Sequence Source Affymetrix Proprietary Database