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[194216_x_at]

Description AV199440_rc /REP_DB=TREMBL Accession /GB=AV199440 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk546a5 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 50.7
(-0.1)
A 		27.8
(-3)
A 		52.6
(0.1)
A 		75.9
(3)
A 		48
B 38.5
(-3)
A 		73.4
(2.6)
A 		76.2
(3)
P 		41.8
(-2.5)
A 		38
C 39.1
(-3)
A 		45.5
(-2.2)
A 		44.6
(-2.3)
A 		86.5
(3)
P 		47
avr 42.8
(-3) 		48.9
(-1.6) 		57.8
(0.6) 		68.1
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 32.3
(-3)
A 		44.6
(-2.8)
A 		53.5
(-2.6)
M 		52.5
(-2.6)
A 		351.3
(3)
P 		337.5
(2.7)
P 		319
B 43
(-3)
A 		66.5
(-2.5)
P 		58.8
(-2.7)
A 		57.4
(-2.7)
P 		341.8
(3)
P 		275.3
(1.7)
P 		299
C 30.5
(-3)
A 		43.5
(-2.7)
A 		54.8
(-2.5)
A 		65.3
(-2.3)
A 		267
(1.6)
P 		342.1
(3)
P 		312
avr 35.3
(-3) 		51.5
(-2.7) 		55.7
(-2.6) 		58.4
(-2.5) 		320
(3) 		318.3
(3) 		285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 18.5
(3)
A 		6
(-3)
A 		13.7
(0.7)
A 		11.1
(-0.6)
A 		13
B 12.3
(-0.8)
A 		18.1
(3)
A 		17.7
(2.7)
P 		8.9
(-3)
A 		9
C 12.9
(-3)
A 		13.1
(-2.6)
A 		15.6
(3)
A 		14.6
(0.8)
P 		3
avr 14.6
(1.4) 		12.4
(-1.7) 		15.7
(3) 		11.5
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 6
(-3)
A 		15.9
(-2.4)
A 		11.6
(-2.7)
M 		13.3
(-2.6)
A 		106
(3)
P 		82.2
(1.6)
P 		100
B 15
(-3)
A 		22.1
(-2.6)
P 		14.3
(-3)
A 		15.2
(-3)
P 		138.9
(3)
P 		102.7
(1.3)
P 		125
C 11.3
(-3)
A 		13.3
(-2.9)
A 		14
(-2.8)
A 		13.1
(-2.9)
A 		86.4
(1.4)
P 		114.5
(3)
P 		103
avr 10.8
(-3) 		17.1
(-2.6) 		13.3
(-2.8) 		13.9
(-2.8) 		110.4
(3) 		99.8
(2.4) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194216_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20467
Sequence Type Exemplar sequence
Representative Public ID AV199440 NCBI
Target Description AV199440_rc /REP_DB=TREMBL Accession /GB=AV199440 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk546a5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064210(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064210 NCBI Caenorhabditis elegans C50E10.1 (C50E10.1) mRNA, complete cds. 11/11 A 
C50E10.1 ENSEMBL cdna:known chromosome:CEL140:II:12301043:12302313:-1 gene:C50E10.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034844 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12301049-12301641(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E10.1
Entrez Gene 174873 Entrez gene
SwissProt Q95NF0 EMBL-EBI
WormBase CE28141 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_496611 C50E10.1 [Caenorhabditis elegans] gb|AAK73858.1| Hypothetical protein C50E10.1 [Caenorhabditis elegans] 2.0E-42
Sequence
Target Sequence 
>C. ELEGANS:194216_X_AT
acgtcatcaacgtctccggaagaggaaattccgtgcatttgcttcaattgctggggcaac
gtggcggccgccgcaaactcgaaaacgtggaaatcgccgaatcaagcggatttccgatcg
gcggcggcaccgttgacggaagaaaaaagccacgcttgatttctcaaatatcgtcaactg
tatccagtgtgtcgagtgtaaaatcgggaaccaatcgccatttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTCATCAACGTCTCCGGAAGAGG 237 95 50 Antisense
AATTCCGTGCATTTGCTTCAATTGC 571 177 76 Antisense
TCAATTGCTGGGGCAACGTGGCGGC 710 633 93 Antisense
GCCGCCGCAAACTCGAAAACGTGGA 108 285 116 Antisense
GAAAACGTGGAAATCGCCGAATCAA 448 353 130 Antisense
TCAAGCGGATTTCCGATCGGCGGCG 512 631 151 Antisense
GCGGCGGCACCGTTGACGGAAGAAA 475 293 170 Antisense
AAAAGCCACGCTTGATTTCTCAAAT 458 131 194 Antisense
TTCTCAAATATCGTCAACTGTATCC 368 691 210 Antisense
AACTGTATCCAGTGTGTCGAGTGTA 146 141 225 Antisense
AAATCGGGAACCAATCGCCATTTGC 585 115 250 Antisense
Sequence Source Affymetrix Proprietary Database