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[194215_x_at] Zinc finger C-x8-C-x5-C-x3-H type (and similar).

Description CEK093E2R_rc /REP_DB=TREMBL Accession /GB=D66198 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk93e2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_high_8_8 > 38      6grp_highest_nonorm > 99      6grp_total > 87      4grp_total > 41      6grp_highest_sub > Da      6grp_cgc > 59      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 179.3
(-3)
P 		251
(3)
P 		228.5
(1.1)
P 		183.2
(-2.7)
P 		72
B 180.2
(-3)
P 		210.4
(-0.9)
P 		265.2
(3)
P 		222.5
(-0)
P 		85
C 168.3
(-3)
M 		217.9
(3)
P 		172.3
(-2.5)
P 		204.2
(1.3)
P 		50
avr 175.9
(-3) 		226.4
(3) 		222
(2.5) 		203.3
(0.3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3448
1 2 3 4 5 6 range
A 193.7
(-2.9)
P 		161.5
(-3)
P 		176
(-3)
P 		258.4
(-2.8)
P 		1647
(-0.4)
P 		3595.4
(3)
P 		3434
B 147.5
(-3)
P 		195.5
(-2.9)
P 		228.9
(-2.8)
P 		399.7
(-2.5)
P 		1313
(-0.7)
P 		3235.6
(3)
P 		3088
C 166
(-3)
P 		159.3
(-3)
P 		201.6
(-2.9)
P 		539.9
(-2.3)
P 		1511
(-0.5)
P 		3451.5
(3)
P 		3292
avr 169.1
(-3) 		172.1
(-3) 		202.2
(-2.9) 		399.3
(-2.6) 		1490.3
(-0.6) 		3427.5
(3) 		3258
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 65.3
(3)
P 		54.5
(1.3)
P 		59.7
(2.1)
P 		26.8
(-3)
P 		39
B 57.5
(1.3)
P 		52
(-1)
P 		61.4
(3)
P 		47.4
(-3)
P 		14
C 55.7
(1.5)
M 		62.6
(3)
P 		60.1
(2.5)
P 		34.4
(-3)
P 		28
avr 59.5
(2.8) 		56.4
(2) 		60.4
(3) 		36.2
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1171
1 2 3 4 5 6 range
A 35.7
(-3)
P 		57.4
(-2.8)
P 		38.3
(-3)
P 		65.5
(-2.8)
P 		497
(0.3)
P 		875.4
(3)
P 		840
B 51.3
(-3)
P 		65.1
(-2.9)
P 		55.6
(-3)
P 		105.9
(-2.7)
P 		533.5
(-0.5)
P 		1206.6
(3)
P 		1155
C 61.5
(-2.9)
P 		48.6
(-3)
P 		51.3
(-3)
P 		108.6
(-2.7)
P 		488.9
(-0.6)
P 		1155.4
(3)
P 		1107
avr 49.5
(-3) 		57
(-2.9) 		48.4
(-3) 		93.3
(-2.7) 		506.5
(-0.3) 		1079.1
(3) 		1031
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194215_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21426
Sequence Type Exemplar sequence
Representative Public ID CEK093E2R NCBI
Target Description CEK093E2R_rc /REP_DB=TREMBL Accession /GB=D66198 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk93e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070165 NCBI Caenorhabditis elegans Muscle EXcess family member (mex-5) (mex-5) mRNA, complete cds. 11/11 None
W02A2.7 ENSEMBL cdna:known chromosome:CEL140:IV:13353692:13356073:1 gene:W02A2.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13355710-13356048(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger C-x8-C-x5-C-x3-H type (and similar).
Gene Symbol mex-5
Ensembl W02A2.7
Entrez Gene 178296 Entrez gene
SwissProt Q9XUB2 EMBL-EBI
WormBase CE21237 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05310 Hypothetical protein W02A2.7 [Caenorhabditis elegans] ref|NP_502566.1| Muscle EXcess family member (mex-5) [Caenorhabditis elegans] sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 0.0
blast CAE66691 Hypothetical protein CBG12031 [Caenorhabditis briggsae] 1.0E-155
blast CAA88088 Hypothetical protein AH6.5 [Caenorhabditis elegans] ref|NP_496043.1| Muscle EXcess family member (mex-6) [Caenorhabditis elegans] sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 5.8E-6
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 2.8E-11
Sequence
Target Sequence 
>C. ELEGANS:194215_X_AT
atttttaccagctttcttgtgcctttttacccgattttcccacatagcaaaatttatctt
tatccggattttattcccaatatgttttttttatcaaatcccaccccaattgtttaccat
ttcaccattcctggccccaaatcactttgtgagtccacccaacataatctaatatagaat
gttgacatccagcctcctcccacctcttaccctcaaatactatctagcatgtcggccctt
gatcggctgacaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTTACCAGCTTTCTTGTGCCTT 621 13 19 Antisense
ACCCGATTTTCCCACATAGCAAAAT 378 89 47 Antisense
TCTTTATCCGGATTTTATTCCCAAT 13 613 75 Antisense
AATTGTTTACCATTTCACCATTCCT 472 175 126 Antisense
CCTGGCCCCAAATCACTTTGTGAGT 372 265 148 Antisense
ATCACTTTGTGAGTCCACCCAACAT 563 27 159 Antisense
GAGTCCACCCAACATAATCTAATAT 708 399 169 Antisense
ATAGAATGTTGACATCCAGCCTCCT 176 23 192 Antisense
CCTCTTACCCTCAAATACTATCTAG 427 267 221 Antisense
AATACTATCTAGCATGTCGGCCCTT 83 173 234 Antisense
TCGGCCCTTGATCGGCTGACAATAT 481 607 250 Antisense
Sequence Source Affymetrix Proprietary Database