[Home] | [Total List]

[194213_x_at] cyclin

Description AU116636_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=H31G24.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU116636 /WB_GENE_ID=H31G24.4 /WP=CE23835 /CHR=1 /FEA=Genomic Cluster /DEF=cyclin; Caenorhabditis elegans cDNA clone:yk747b1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 22      6grp_total > 88      4grp_total > 17      6grp_cgc > 59      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 61.1
(-3)
M 		143.5
(3)
P 		115.1
(0.9)
P 		131.4
(2.1)
P 		82
B 77.7
(-3)
P 		104.1
(-1.6)
P 		85.4
(-2.6)
P 		194.6
(3)
P 		117
C 86.5
(-2.2)
P 		75.1
(-3)
P 		94.4
(-1.7)
P 		163.2
(3)
P 		88
avr 75.1
(-3) 		107.6
(-0.8) 		98.3
(-1.4) 		163.1
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2850
1 2 3 4 5 6 range
A 119
(-3)
P 		101.1
(-3)
M 		150.1
(-2.9)
P 		317.4
(-2.5)
P 		1642
(0.7)
P 		2570.9
(3)
P 		2470
B 99.1
(-3)
P 		129.9
(-2.9)
P 		137.2
(-2.9)
P 		350.4
(-2.5)
P 		1594.7
(0.2)
P 		2919.7
(3)
P 		2821
C 70.2
(-3)
P 		111.4
(-2.9)
P 		98.9
(-2.9)
P 		269.8
(-2.6)
P 		1538.1
(0.2)
P 		2811.7
(3)
P 		2742
avr 96.1
(-3) 		114.1
(-3) 		128.7
(-2.9) 		312.5
(-2.5) 		1591.6
(0.4) 		2767.4
(3) 		2671
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 22.2
(-1.5)
M 		31.1
(3)
P 		30.1
(2.5)
P 		19.2
(-3)
P 		12
B 24.8
(-1.6)
P 		25.7
(-1.4)
P 		19.8
(-3)
P 		41.5
(3)
P 		22
C 28.6
(0.7)
P 		21.6
(-3)
P 		32.9
(3)
P 		27.5
(0.1)
P 		11
avr 25.2
(-3) 		26.1
(-1.7) 		27.6
(0.4) 		29.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1067
1 2 3 4 5 6 range
A 21.9
(-3)
P 		36
(-2.9)
M 		32.7
(-2.9)
P 		80.5
(-2.4)
P 		495.5
(1.7)
P 		625.9
(3)
P 		604
B 34.5
(-3)
P 		43.2
(-2.9)
P 		33.3
(-3)
P 		92.8
(-2.7)
P 		647.9
(0.5)
P 		1088.8
(3)
P 		1056
C 26
(-3)
P 		34
(-2.9)
P 		25.2
(-3)
P 		54.3
(-2.8)
P 		497.7
(0.1)
P 		941.2
(3)
P 		916
avr 27.5
(-3) 		37.7
(-2.9) 		30.4
(-3) 		75.9
(-2.7) 		547
(0.6) 		885.3
(3) 		858
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194213_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22652
Sequence Type Exemplar sequence
Representative Public ID AU116636 NCBI
Target Description AU116636_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=H31G24.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU116636 /WB_GENE_ID=H31G24.4 /WP=CE23835 /CHR=1 /FEA=Genomic Cluster /DEF=cyclin; Caenorhabditis elegans cDNA clone:yk747b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058896(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058896 NCBI Caenorhabditis elegans H31G24.4 (cyclin) mRNA, complete cds. 11/11 A 
SNAP00000031638 ENSEMBL cdna:SNAP chromosome:CEL140:I:4114879:4116074:1 11/11 None
GENEFINDER00000031646 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4114879:4116074:1 11/11 None
H31G24.4 ENSEMBL cdna:known chromosome:CEL140:I:4114862:4116305:1 gene:H31G24.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069646 8/11 Cross Hyb Matching Probes A 
SNAP00000002298 8/11 Cross Hyb Matching Probes None
GENEFINDER00000002300 8/11 Cross Hyb Matching Probes None
Y43E12A.1 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4114879-4116075(+) 100.0 100.0
Public Domain and Genome References
Gene Title cyclin
Gene Symbol cyb-2.2
Ensembl H31G24.4
Entrez Gene 171993 Entrez gene
SwissProt Q9BLB5 EMBL-EBI
WormBase CE23835 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17116_AT cyclin 1b (CYC1b) at
ATH1-121501:261159_S_AT cyclin, putative at
YEAST_2:1772627_AT B-type cyclin involved in cell cycle progression; activates Cdc28p to promote the G2/M transition; may be involved in DNA replication and spindle assembly; accumulates during S phase and G2, then targeted for ubiquitin-mediated degradation Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
74 regulation of progression through cell cycle inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21417 Cyclin b protein 2.2 [Caenorhabditis elegans] ref|NP_491297.1| H31G24.4 [Caenorhabditis elegans] 0.0
blast CAA15975 Hypothetical protein Y43E12A.1 [Caenorhabditis elegans] ref|NP_502047.1| CYclin B family member (cyb-2.1) [Caenorhabditis elegans] 1.0E-162
blast CAA94384 Hypothetical protein ZC168.4 [Caenorhabditis elegans] ref|NP_501987.1| ZC168.4 [Caenorhabditis elegans] sp|Q10653|CCNB1_CAEEL G2/mitotic-specific cyclin B1 gb|AAA84394.1| cyclin B 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR004367 EMBL-EBI Cyclin, C-terminal 2.5E-22
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 1.0E-52
Sequence
Target Sequence 
>C. ELEGANS:194213_X_AT
ttacttgccagacatcctcgaatacgagttgatcactgagaacacattcagcaagaagca
gatattggctatggaacagaccatcctcaacgccttgaactttgacttgtcctgcccatc
ttcgcttgtcttcctccgttatatctcaaaaactctcacagagaatgacgtcaatccaat
cgataaggaaacgttctattatgtgcacaatatctccaagtgtctcggagaactcgcatt
gctcgattcggtcatgtctacggttccaaggtcgcacgttgctagtgcttcgatgatcat
cactctcaatattatctccgttgatggaattaatccgaagactgctgcatcgatgattcg
gaaacaattcggagcctccaagcaagatatttatgatgctatctctctgctcgctcaagt
cgcatataaaaacttcagacatcagaagctttgcgccattagggaaaagtaccagtccag
caagtttggacgagtatcctacttgatgaccgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACTTGCCAGACATCCTCGAATAC 543 679 443 Antisense
AACGCCTTGAACTTTGACTTGTCCT 333 145 531 Antisense
GTGTCTCGGAGAACTCGCATTGCTC 53 487 662 Antisense
CGCATTGCTCGATTCGGTCATGTCT 435 253 677 Antisense
TCATGTCTACGGTTCCAAGGTCGCA 620 621 694 Antisense
AAGGTCGCACGTTGCTAGTGCTTCG 331 159 710 Antisense
ATCATCACTCTCAATATTATCTCCG 184 31 738 Antisense
ATTTATGATGCTATCTCTCTGCTCG 695 15 831 Antisense
CTCTGCTCGCTCAAGTCGCATATAA 661 231 847 Antisense
GACATCAGAAGCTTTGCGCCATTAG 24 371 880 Antisense
GAGTATCCTACTTGATGACCGACGA 103 399 934 Antisense
Sequence Source Affymetrix Proprietary Database