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[194212_x_at]

Description C57426_rc /REP_DB=TREMBL Accession /GB=C57426 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk303d7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 12      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 05      6grp_total > 33      4grp_total > 60      6grp_high1_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4819
1 2 3 4 range
A 5294.7
(1)
P 		6085.1
(2.1)
P 		6711.1
(3)
P 		2475.3
(-3)
P 		4236
B 5648.2
(1.8)
P 		6535.2
(3)
P 		6222.7
(2.6)
P 		2068.2
(-3)
P 		4467
C 5715.4
(2.8)
P 		5658.2
(2.7)
P 		5849.6
(3)
P 		1892.5
(-3)
P 		3957
avr 5552.8
(2) 		6092.8
(2.8) 		6261.1
(3) 		2145.3
(-3) 		4116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5384
1 2 3 4 5 6 range
A 8634.6
(3)
P 		7081.5
(0.9)
P 		7401.8
(1.3)
P 		5385.3
(-1.4)
P 		4221.7
(-3)
P 		4362.7
(-2.8)
P 		4413
B 7960.4
(3)
P 		6369.1
(0.6)
P 		6571.6
(0.9)
P 		5757.4
(-0.4)
P 		4889.9
(-1.7)
P 		4033.8
(-3)
P 		3927
C 7400.7
(2)
P 		5691
(-0)
P 		8194
(3)
P 		4509.2
(-1.5)
P 		5236.8
(-0.6)
P 		3250.6
(-3)
P 		4943
avr 7998.6
(3) 		6380.5
(0.6) 		7389.1
(2.1) 		5217.3
(-1.1) 		4782.8
(-1.7) 		3882.4
(-3) 		4116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1720
1 2 3 4 range
A 1927.8
(3)
P 		1320.9
(0.7)
P 		1754.4
(2.3)
P 		362.3
(-3)
P 		1566
B 1801.2
(3)
P 		1614.1
(2.2)
P 		1441.9
(1.4)
P 		440.7
(-3)
P 		1361
C 1892
(2.5)
P 		1626.8
(1.6)
P 		2038.8
(3)
P 		319.1
(-3)
P 		1720
avr 1873.7
(3) 		1520.6
(1.6) 		1745
(2.5) 		374
(-3) 		1500

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1863
1 2 3 4 5 6 range
A 1591.7
(-0.8)
P 		2518.5
(3)
P 		1612
(-0.7)
P 		1365.8
(-1.7)
P 		1273.9
(-2.1)
P 		1062.2
(-3)
P 		1456
B 2769.8
(3)
P 		2120
(-0.1)
P 		1595.8
(-2.6)
P 		1524.9
(-2.9)
P 		1986.7
(-0.7)
P 		1504.2
(-3)
P 		1266
C 2743.1
(3)
P 		1736.5
(-0.3)
P 		2085.5
(0.9)
P 		906.8
(-3)
P 		1694.5
(-0.4)
P 		1088.2
(-2.4)
P 		1836
avr 2368.2
(3) 		2125
(1.7) 		1764.4
(-0.2) 		1265.8
(-2.8) 		1651.7
(-0.7) 		1218.2
(-3) 		1150
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194212_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21626
Sequence Type Exemplar sequence
Representative Public ID C57426 NCBI
Target Description C57426_rc /REP_DB=TREMBL Accession /GB=C57426 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk303d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028014(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028014 NCBI Caenorhabditis elegans F37C4.5a (F37C4.5) mRNA, complete cds. 10/11 None
F37C4.5a.1 ENSEMBL cdna:known chromosome:CEL140:IV:3871721:3873800:-1 gene:F37C4.5 10/11 A 
F37C4.5a.2 ENSEMBL cdna:known chromosome:CEL140:IV:3871721:3873802:-1 gene:F37C4.5 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028015 8/11 Cross Hyb Matching Probes None
SNAP00000038134 8/11 Cross Hyb Matching Probes None
GENEFINDER00000038145 8/11 Cross Hyb Matching Probes None
F37C4.5b 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177146 2 1 NM_001028014 194212_x_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3871851-3872208(-) 100.0 100.0
Public Domain and Genome References
Ensembl F37C4.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95171 Hypothetical protein F37C4.5a [Caenorhabditis elegans] ref|NP_001023185.1| F37C4.5a [Caenorhabditis elegans] sp|O44400|F37C4_CAEEL Protein F37C4.5 0.0
blast CAE65665 Hypothetical protein CBG10731 [Caenorhabditis briggsae] 0.0
blast CAE65666 Hypothetical protein CBG10732 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:194212_X_AT
agcagttgccaagatccacagattctagattcaggtccacctcaacaccccagaagccgt
ggaagtcgacgaggcaagcgtcgagccaaccgtcggagccgccatcactccggagaagat
tctcgactacaccgtccaacttgcgccaggacagtccagcactttcgtcgtcaagtacac
taccgagcacccacaggctgagcaaattcgctatgaggagaagttctgaagtgcttatgc
gatgatttttccgctttaacttgatctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGTTGCCAAGATCCACAGATTC 4 79 15 Antisense
CAGATTCTAGATTCAGGTCCACCTC 640 205 33 Antisense
CTCAACACCCCAGAAGCCGTGGAAG 660 225 55 Antisense
GAAGCCGTGGAAGTCGACGAGGCAA 68 345 67 Antisense
CCGCCATCACTCCGGAGAAGATTCT 83 263 113 Antisense
GGAGAAGATTCTCGACTACACCGTC 83 519 126 Antisense
CGCCAGGACAGTCCAGCACTTTCGT 210 257 158 Antisense
GTCGTCAAGTACACTACCGAGCACC 589 471 181 Antisense
GAGCACCCACAGGCTGAGCAAATTC 59 391 199 Antisense
GTGCTTATGCGATGATTTTTCCGCT 638 479 245 Antisense
ATTTTTCCGCTTTAACTTGATCTGT 166 15 259 Antisense
Sequence Source Affymetrix Proprietary Database