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[194211_x_at]

Description AV193280 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C03A7.14 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV193280 /WB_GENE_ID=C03A7.14 /WP=CE07872 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk615d5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 58      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      6grp_cgc > 64      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7513
1 2 3 4 range
A 17.8
(-3)
A 		7531.2
(3)
P 		6279.8
(2)
P 		70.6
(-3)
A 		7513
B 34
(-3)
A 		5929.7
(3)
P 		5486.2
(2.5)
P 		52.7
(-3)
P 		5896
C 51.5
(-3)
A 		5848.2
(3)
P 		5124.7
(2.3)
P 		108.8
(-2.9)
A 		5797
avr 34.4
(-3) 		6436.4
(3) 		5630.2
(2.2) 		77.4
(-3) 		6402

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2037
1 2 3 4 5 6 range
A 2132.3
(-0.8)
P 		3285.6
(3)
P 		1444.2
(-3)
P 		1999.7
(-1.2)
P 		3148.6
(2.6)
P 		2887.5
(1.7)
P 		1841
B 1672.8
(-3)
P 		3256.7
(3)
P 		1947.2
(-2)
P 		2272.2
(-0.7)
P 		2545.1
(0.3)
P 		2730.5
(1)
P 		1584
C 1623.2
(-3)
P 		3169.1
(2)
P 		1829.4
(-2.3)
P 		1721.9
(-2.7)
P 		3481.2
(3)
P 		2451.2
(-0.3)
P 		1858
avr 1809.4
(-2.7) 		3237.1
(3) 		1740.3
(-3) 		1997.9
(-2) 		3058.3
(2.3) 		2689.7
(0.8) 		1497
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1780
1 2 3 4 range
A 6.5
(-3)
A 		1634.8
(3)
P 		1641.7
(3)
P 		10.3
(-3)
A 		1635
B 10.9
(-3)
A 		1464.5
(3)
P 		1271.3
(2.2)
P 		11.2
(-3)
P 		1454
C 17
(-3)
A 		1681.4
(2.6)
P 		1786.1
(3)
P 		18.3
(-3)
A 		1769
avr 11.5
(-3) 		1593.6
(3) 		1566.4
(2.9) 		13.3
(-3) 		1582

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 854
1 2 3 4 5 6 range
A 393.1
(-2.4)
P 		1168.5
(3)
P 		314.5
(-3)
P 		507.2
(-1.6)
P 		950.1
(1.5)
P 		703
(-0.3)
P 		854
B 582
(-1.9)
P 		1084
(3)
P 		472.8
(-3)
P 		601.8
(-1.7)
P 		1034
(2.5)
P 		1018.2
(2.4)
P 		611
C 601.7
(-1)
P 		967
(1.8)
P 		465.6
(-2.1)
P 		346.3
(-3)
P 		1126.5
(3)
P 		820.5
(0.6)
P 		780
avr 525.6
(-2) 		1073.2
(3) 		417.6
(-3) 		485.1
(-2.4) 		1036.9
(2.7) 		847.2
(0.9) 		656
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194211_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25717
Sequence Type Exemplar sequence
Representative Public ID AV193280 NCBI
Target Description AV193280 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C03A7.14 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV193280 /WB_GENE_ID=C03A7.14 /WP=CE07872 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk615d5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071992 NCBI Caenorhabditis elegans Activated in Blocked Unfolded protein response family member (abu-8) (abu-8) mRNA, complete cds. 11/11 A 
SNAP00000035293 ENSEMBL cdna:SNAP chromosome:CEL140:V:5192951:5194379:-1 10/11 None
GENEFINDER00000035294 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5192951:5194379:-1 10/11 None
C03A7.14 ENSEMBL cdna:known chromosome:CEL140:V:5192828:5194420:-1 gene:C03A7.14 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071982 5/11 Cross Hyb Matching Probes A 
NM_071981 2/11 Cross Hyb Matching Probes A 
NM_071983 7/11 Cross Hyb Matching Probes A 
SNAP00000035278 2/11 Cross Hyb Matching Probes None
SNAP00000035279 5/11 Cross Hyb Matching Probes None
SNAP00000035280 7/11 Cross Hyb Matching Probes None
GENEFINDER00000035296 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035297 7/11 Cross Hyb Matching Probes None
GENEFINDER00000035298 2/11 Cross Hyb Matching Probes None
C03A7.4 2/11 Cross Hyb Matching Probes A 
C03A7.7 5/11 Cross Hyb Matching Probes A 
C03A7.8 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5192881-5194380(-) 97.73 100.0
chrV:5163138-5164532(-) 93.04 93.04
Public Domain and Genome References
Gene Title
Gene Symbol abu-8
Ensembl C03A7.14
Entrez Gene 178904 Entrez gene
SwissProt O16511 EMBL-EBI
WormBase CE07872 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66007 Activated in blocked unfolded protein response protein 8 [Caenorhabditis elegans] ref|NP_504393.1| Activated in Blocked Unfolded protein response family member (abu-8) [Caenorhabditis elegans] 5.0E-49
blast AAB65995 Activated in blocked unfolded protein response protein 7 [Caenorhabditis elegans] ref|NP_504384.1| Activated in Blocked Unfolded protein response family member (abu-7) [Caenorhabditis elegans] 1.0E-46
blast CAE64085 Hypothetical protein CBG08690 [Caenorhabditis briggsae] 3.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 3.1E-33
Sequence
Target Sequence 
>C. ELEGANS:194211_X_AT
aaccaaggatctgctaactgcgctccagcctgccagccagcttgtgacaactcttgcaca
tcccaacaggcccagccagtgtaccaacaagcccagccaacttaccaagtccagcaaacc
actgccgctccaatgtacgatccatacaacaaccaaggatctgccaactgcgctccagct
tgccaaccagcttgtgacaactcctgcacttcccagcagactcaaccaatgtaccaacca
tacgacacaaccactgaggctccagctcaagtcatccagattgttctccagacttctgtt
gctcaatcatcccaatgtgctccacaatgcgaacagtcctgccaacagcaatgtgttcag
caacaacagccagctgctcagtgccaaactgcctgccaatcatcatgctctaactcctgc
caagctgctcaaccagcaactactgcctgccaacagagcccacaacagagctcctgctcc
tgccaaactaactactctccatgcggaaatggacaatgctgccgcagaaagtaagaagga
ccgaatcgatcgatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAAGGATCTGCTAACTGCGCTC 222 149 818 Antisense
CCAGCCAGCTTGTGACAACTCTTGC 569 273 850 Antisense
ACAACCAAGGATCTGCCAACTGCGC 575 111 966 Antisense
GCTTGCCAACCAGCTTGTGACAACT 684 305 995 Antisense
TTCCCAGCAGACTCAACCAATGTAC 19 699 1027 Antisense
TCATCCAGATTGTTCTCCAGACTTC 703 621 1089 Antisense
TCCAGACTTCTGTTGCTCAATCATC 44 591 1104 Antisense
TCCACAATGCGAACAGTCCTGCCAA 151 589 1138 Antisense
GCAACAACAGCCAGCTGCTCAGTGC 222 319 1177 Antisense
CCAATCATCATGCTCTAACTCCTGC 492 277 1213 Antisense
AAGAAGGACCGAATCGATCGATCGA 110 153 1350 Antisense
Sequence Source Affymetrix Proprietary Database