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[194210_x_at]

Description AV179532_rc /REP_DB=TREMBL Accession /GB=AV179532 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk594d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 90      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 64      6grp_total > 83      4grp_total > 32      6grp_highest_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 910
1 2 3 4 range
A 574.2
(-3)
P 		948.9
(0.4)
P 		1227
(3)
P 		1170.8
(2.5)
P 		653
B 497.9
(-3)
P 		921.2
(-0.2)
P 		1316.6
(2.5)
P 		1395.7
(3)
P 		898
C 608.7
(-3)
P 		964.8
(-0.3)
P 		1226.5
(1.6)
P 		1407.8
(3)
P 		799
avr 560.3
(-3) 		945
(0) 		1256.7
(2.5) 		1324.8
(3) 		765

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 574
1 2 3 4 5 6 range
A 769.7
(-2.9)
P 		825.3
(-2.1)
P 		762.5
(-3)
P 		977.3
(0.2)
P 		1159.7
(3)
P 		879.1
(-1.2)
P 		397
B 689.7
(-3)
P 		1039.5
(0.8)
P 		739.3
(-2.5)
P 		1241.2
(3)
P 		1231.4
(2.9)
P 		753.4
(-2.3)
P 		552
C 667.4
(-3)
P 		1097.5
(2.9)
P 		794.8
(-1.3)
P 		1106.2
(3)
P 		1069.9
(2.5)
P 		977.1
(1.2)
P 		439
avr 708.9
(-3) 		987.4
(0.8) 		765.5
(-2.2) 		1108.2
(2.4) 		1153.7
(3) 		869.9
(-0.8) 		445
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 209.1
(-1.5)
P 		206
(-1.6)
P 		320.8
(3)
P 		171.4
(-3)
P 		149
B 158.8
(-3)
P 		227.5
(-0.2)
P 		305.1
(3)
P 		297.4
(2.7)
P 		146
C 201.5
(-3)
P 		277.4
(-1)
P 		427.5
(3)
P 		237.4
(-2)
P 		226
avr 189.8
(-3) 		237
(-1.2) 		351.1
(3) 		235.4
(-1.3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 358
1 2 3 4 5 6 range
A 141.9
(-3)
P 		293.5
(1.4)
P 		166.1
(-2.3)
P 		247.9
(0.1)
P 		350
(3)
P 		214
(-0.9)
P 		208
B 240
(-1.9)
P 		346
(0.1)
P 		179.5
(-3)
P 		328.7
(-0.2)
P 		500.3
(3)
P 		280.9
(-1.1)
P 		321
C 247.4
(-1.1)
P 		334.9
(2.5)
P 		202.3
(-3)
P 		222.5
(-2.2)
P 		346.2
(3)
P 		327.1
(2.2)
P 		144
avr 209.8
(-2.2) 		324.8
(0.9) 		182.6
(-3) 		266.4
(-0.7) 		398.8
(3) 		274
(-0.5) 		216
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194210_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22390
Sequence Type Exemplar sequence
Representative Public ID AV179532 NCBI
Target Description AV179532_rc /REP_DB=TREMBL Accession /GB=AV179532 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk594d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076251(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076251 NCBI Caenorhabditis elegans F47B7.2b (F47B7.2) mRNA, complete cds. 10/11 A 
F47B7.2a ENSEMBL cdna:known chromosome:CEL140:X:3772742:3778041:1 gene:F47B7.2 9/11 A 
F47B7.2b ENSEMBL cdna:known chromosome:CEL140:X:3772761:3778064:1 gene:F47B7.2 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076253 2/11 Cross Hyb Matching Probes A 
NM_076252 6/11 Cross Hyb Matching Probes A 
GENEFINDER00000025977 6/11 Cross Hyb Matching Probes None
SNAP00000025970 6/11 Cross Hyb Matching Probes None
F47B7.2c 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180664 3 1 NM_076251 194210_x_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3776730-3778030(+) 100.0 100.0
Public Domain and Genome References
Ensembl F47B7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK72057 Hypothetical protein F47B7.2b [Caenorhabditis elegans] ref|NP_508652.1| F47B7.2b [Caenorhabditis elegans] 0.0
blast CAE68480 Hypothetical protein CBG14281 [Caenorhabditis briggsae] 0.0
blast AAA80371 Hypothetical protein F47B7.2a [Caenorhabditis elegans] ref|NP_508654.1| F47B7.2a [Caenorhabditis elegans] 0.0
blast AAK72058 Hypothetical protein F47B7.2c [Caenorhabditis elegans] ref|NP_508653.1| F47B7.2c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006863 EMBL-EBI Erv1/Alr 1.6E-15
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 1.1E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508652.1 2 12-34,627-644
F47B7.2a 1 12-34
F47B7.2b 2 12-34,627-644
Sequence
Target Sequence 
>C. ELEGANS:194210_X_AT
cacctcaatccaaaattccaagttcatgctggcaaagtggatcaactggaagcaaatgac
aaagtgaaaaacgtactagacgcaagtcctcagcgaacatggaaggatattgatggatac
gacggtcttccggactctggccgctcacattattacttcatcttcctctcgttgattggt
gtcgcgctgattgtcatctactgcaaatacaggaagaatagatcaaagtgtccttggagt
tcctcaccggtaaagcagaatatcgtctaacaagtcaccgaatgaaggatatctgatctc
atcagctattccagaaagttacaagttcacttttctttttgtgttatatttattttctat
tcctgtcacagctattaatttgtgctcatcatctggctgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCTCAATCCAAAATTCCAAGTTC 465 201 13 Antisense
AACGTACTAGACGCAAGTCCTCAGC 458 141 82 Antisense
ATGGATACGACGGTCTTCCGGACTC 479 49 125 Antisense
CGCTCACATTATTACTTCATCTTCC 602 255 154 Antisense
TCTTCCTCTCGTTGATTGGTGTCGC 97 619 173 Antisense
TCGCGCTGATTGTCATCTACTGCAA 125 599 194 Antisense
ATAGATCAAAGTGTCCTTGGAGTTC 710 21 230 Antisense
TTGGAGTTCCTCACCGGTAAAGCAG 76 665 246 Antisense
CTGATCTCATCAGCTATTCCAGAAA 87 239 305 Antisense
TTATTTTCTATTCCTGTCACAGCTA 639 679 362 Antisense
AATTTGTGCTCATCATCTGGCTGAC 135 175 389 Antisense
Sequence Source Affymetrix Proprietary Database