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[194209_x_at]

Description AV196832 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y25C1A.7A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196832 /WB_GENE_ID=Y25C1A.7A /WP=CE21474 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk659a9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 69      4grp_high_8_8 > 44      6grp_highest_nonorm > 81      6grp_total > 89      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 365.9
(2.3)
P 		378.4
(3)
P 		269.2
(-3)
P 		326.4
(0.1)
M 		109
B 364.6
(1.1)
P 		312
(-0.9)
P 		416.9
(3)
P 		255.9
(-3)
P 		161
C 282.7
(-3)
P 		371.3
(3)
P 		303.5
(-1.6)
P 		335.4
(0.6)
P 		89
avr 337.7
(1) 		353.9
(3) 		329.9
(0) 		305.9
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 243.5
(-0.1)
P 		350.5
(2.8)
P 		134.5
(-3)
P 		247
(0)
P 		239.5
(-0.2)
P 		358.9
(3)
P 		224
B 163.7
(-1.6)
P 		227.4
(0.8)
P 		125.7
(-3)
P 		235.1
(1.1)
P 		244.4
(1.5)
P 		284.4
(3)
P 		159
C 332.9
(1)
P 		200.6
(-3)
P 		399.9
(3)
P 		215.4
(-2.6)
P 		365.1
(2)
P 		256.9
(-1.3)
P 		199
avr 246.7
(-1) 		259.5
(-0) 		220
(-3) 		232.5
(-2.1) 		283
(1.7) 		300.1
(3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 133.2
(3)
P 		82.1
(-0.6)
P 		70.4
(-1.4)
P 		47.8
(-3)
M 		85
B 116.3
(3)
P 		77.1
(-0.8)
P 		96.6
(1.1)
P 		54.5
(-3)
P 		62
C 93.6
(1.4)
P 		106.8
(3)
P 		105.8
(2.9)
P 		56.6
(-3)
P 		50
avr 114.4
(3) 		88.7
(0.5) 		90.9
(0.7) 		53
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 44.9
(-2)
P 		124.6
(3)
P 		29.3
(-3)
P 		62.6
(-0.9)
P 		72.3
(-0.3)
P 		87.4
(0.7)
P 		95
B 57
(-0.9)
P 		75.7
(0.6)
P 		30.5
(-3)
P 		62.3
(-0.5)
P 		99.3
(2.5)
P 		106
(3)
P 		76
C 123.4
(3)
P 		61.2
(-1.7)
P 		101.8
(1.4)
P 		43.3
(-3)
P 		118.1
(2.6)
P 		86
(0.2)
P 		80
avr 75.1
(-0) 		87.2
(1.7) 		53.9
(-3) 		56.1
(-2.7) 		96.6
(3) 		93.1
(2.5) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194209_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23640
Sequence Type Exemplar sequence
Representative Public ID AV196832 NCBI
Target Description AV196832 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y25C1A.7A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196832 /WB_GENE_ID=Y25C1A.7A /WP=CE21474 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk659a9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062037, NM_001027249, NM_062038
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y25C1A.7a.1 ENSEMBL cdna:known chromosome:CEL140:II:3062544:3071057:-1 gene:Y25C1A.7 9/11 None
Y25C1A.7a.2 ENSEMBL cdna:known chromosome:CEL140:II:3062544:3071059:-1 gene:Y25C1A.7 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027249 8/11 Cross Hyb Matching Probes None
NM_062037 8/11 Cross Hyb Matching Probes A 
NM_062038 8/11 Cross Hyb Matching Probes A 
SNAP00000041877 6/11 Cross Hyb Matching Probes None
GENEFINDER00000041892 8/11 Cross Hyb Matching Probes None
Y25C1A.7b 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3065228-3071032(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y25C1A.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T33904 hypothetical protein Y25C1A.7a - Caenorhabditis elegans 0.0
blast NP_494438 Y25C1A.7a [Caenorhabditis elegans] gb|AAX88817.1| Hypothetical protein Y25C1A.7a [Caenorhabditis elegans] 1.0E-79
blast NP_001022420 Y25C1A.7c [Caenorhabditis elegans] gb|AAX88818.1| Hypothetical protein Y25C1A.7c [Caenorhabditis elegans] 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR006977 EMBL-EBI Protein of unknown function DUF649 6.2E-31
Pfam IPR006977 EMBL-EBI Protein of unknown function DUF649 2.1E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
Y25C1A.7a.1 5 107-129,232-254,264-286,291-313,323-345
Y25C1A.7a.2 5 107-129,232-254,264-286,291-313,323-345
Sequence
Target Sequence 
>C. ELEGANS:194209_X_AT
atagccccagtttttgcaatttgtcacacggttttttgaccaacggaaacttgaaaactg
gcagtttttcagagcaaaaaatgaatttttatacaagtttcgtaacctctgcatctacat
taatcttcctgtacgtcgtcattgttccacttcttctctacggacttttatggaatcgcc
gtagtgagcttcttcatccatacgttgatcttgtctgtctctatggatactcgttggcta
tttttattcctgtttcggttctctggattgttgacattggatggttccgttgggctctga
tcttcgcgtcggttggactttcgggaactgtgctcgccagagcaatttggccagccgtac
agaatgataacaacaaaatgatcgcattcggtaccgtaatcagtgtcgtcgtgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGCCCCAGTTTTTGCAATTTGTC 266 21 603 Antisense
TTTCGTAACCTCTGCATCTACATTA 250 671 700 Antisense
TTCCTGTACGTCGTCATTGTTCCAC 49 699 728 Antisense
CACTTCTTCTCTACGGACTTTTATG 133 197 750 Antisense
TGGAATCGCCGTAGTGAGCTTCTTC 171 547 773 Antisense
CATACGTTGATCTTGTCTGTCTCTA 651 213 801 Antisense
TTTTTATTCCTGTTTCGGTTCTCTG 477 675 843 Antisense
CATTGGATGGTTCCGTTGGGCTCTG 63 215 877 Antisense
GGTTGGACTTTCGGGAACTGTGCTC 195 507 913 Antisense
AAATGATCGCATTCGGTACCGTAAT 129 117 978 Antisense
TACCGTAATCAGTGTCGTCGTGCTC 415 649 994 Antisense
Sequence Source Affymetrix Proprietary Database