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[194207_x_at] serine/threonine protein phosphatase /// serine/threonine protein phosphatase

Description C69379 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R08C7.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C69379 /WB_GENE_ID=R08C7.8 /WP=CE07431 /CHR=4 /FEA=Genomic Cluster /DEF=serine-threonine protein phosphatase; C.elegans cDNA clone yk362e8 : 5prime end, single read.
Cluster 6grp_total > 99      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 81.1
(-1.8)
A 		62.8
(-3)
A 		67.4
(-2.7)
A 		151.7
(3)
A 		89
B 77.1
(-0.5)
A 		92.8
(3)
A 		66
(-3)
A 		67.2
(-2.7)
A 		27
C 61.8
(-3)
A 		78.7
(-1.5)
A 		71.2
(-2.1)
A 		127.9
(3)
A 		66
avr 73.3
(-2.4) 		78.1
(-1.7) 		68.2
(-3) 		115.6
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 120.4
(0.3)
A 		52.7
(-3)
A 		77.7
(-1.8)
A 		81.6
(-1.6)
A 		175.4
(3)
A 		142.8
(1.4)
A 		123
B 89.9
(-0.7)
A 		63.7
(-2.8)
A 		60.9
(-3)
A 		71.3
(-2.2)
A 		118.7
(1.5)
A 		138.2
(3)
A 		77
C 64.5
(-3)
A 		98.6
(-1.2)
A 		78
(-2.3)
A 		77.1
(-2.4)
A 		123.2
(0)
A 		181.2
(3)
A 		117
avr 91.6
(-1.6) 		71.7
(-3) 		72.2
(-3) 		76.7
(-2.6) 		139.1
(1.9) 		154.1
(3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 29.5
(3)
A 		13.6
(-3)
A 		17.6
(-1.5)
A 		22.2
(0.2)
A 		16
B 24.6
(3)
A 		22.9
(2)
A 		15.3
(-2.4)
A 		14.3
(-3)
A 		10
C 20.4
(-3)
A 		22.6
(0)
A 		24.8
(3)
A 		21.6
(-1.4)
A 		4
avr 24.8
(3) 		19.7
(-2.5) 		19.2
(-3) 		19.4
(-2.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 22.2
(-2.1)
A 		18.7
(-2.7)
A 		16.9
(-3)
A 		20.7
(-2.4)
A 		52.9
(3)
A 		34.8
(-0)
A 		36
B 31.3
(-0.3)
A 		21.2
(-2)
A 		14.8
(-3)
A 		18.9
(-2.3)
A 		48.2
(2.5)
A 		51.5
(3)
A 		37
C 23.9
(-1.9)
A 		30.1
(-1.1)
A 		19.9
(-2.4)
A 		15.5
(-3)
A 		39.9
(0.2)
A 		60.7
(3)
A 		45
avr 25.8
(-1.4) 		23.3
(-1.8) 		17.2
(-3) 		18.4
(-2.8) 		47
(2.6) 		49
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194207_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25076
Sequence Type Exemplar sequence
Representative Public ID C69379 NCBI
Target Description C69379 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R08C7.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C69379 /WB_GENE_ID=R08C7.8 /WP=CE07431 /CHR=4 /FEA=Genomic Cluster /DEF=serine-threonine protein phosphatase; C.elegans cDNA clone yk362e8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068162, NM_074231
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000001294 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14716835:14718268:-1 None
R08C7.8 ENSEMBL cdna:known chromosome:CEL140:IV:4433079:4434534:-1 gene:R08C7.8 A 
SNAP00000001286 ENSEMBL cdna:SNAP chromosome:CEL140:V:14716835:14718262:-1 None
NM_074231 NCBI Caenorhabditis elegans R08A2.2 (R08A2.2) mRNA, complete cds. A 
SNAP00000031356 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4433079:4434493:-1 None
R08A2.2 ENSEMBL cdna:known chromosome:CEL140:V:14716835:14718279:-1 gene:R08A2.2 A 
NM_068162 NCBI Caenorhabditis elegans R08C7.8 (R08C7.8) mRNA, complete cds. A 
NM_074231 NCBI Caenorhabditis elegans R08A2.2 (R08A2.2) mRNA, complete cds. A 
SNAP00000001286 ENSEMBL cdna:SNAP chromosome:CEL140:V:14716835:14718262:-1 None
GENEFINDER00000031369 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4432677:4434493:-1 None
SNAP00000031356 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4433079:4434493:-1 None
GENEFINDER00000001294 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14716835:14718268:-1 None
NM_068162 NCBI Caenorhabditis elegans R08C7.8 (R08C7.8) mRNA, complete cds. A 
R08A2.2 ENSEMBL cdna:known chromosome:CEL140:V:14716835:14718279:-1 gene:R08A2.2 A 
R08C7.8 ENSEMBL cdna:known chromosome:CEL140:IV:4433079:4434534:-1 gene:R08C7.8 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4433085-4434476(-) 100.0 100.0
chrV:14716835-14718242(-) 95.41 95.41
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
serine/threonine protein phosphatase
Ensembl R08C7.8
R08A2.2
Entrez Gene 177208 Entrez gene
187692 Entrez gene
SwissProt Q9U395 EMBL-EBI
Q21840 EMBL-EBI
WormBase CE35901 Wormbase
CE07431 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB57902 Hypothetical protein R08A2.2 [Caenorhabditis elegans] ref|NP_506632.2| R08A2.2 [Caenorhabditis elegans] 0.0
blast AAC48076 Hypothetical protein R08C7.8 [Caenorhabditis elegans] ref|NP_500563.1| R08C7.8 [Caenorhabditis elegans] 1.0E-180
blast AAC48076 Hypothetical protein R08C7.8 [Caenorhabditis elegans] ref|NP_500563.1| R08C7.8 [Caenorhabditis elegans] 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.3E-13
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 8.7E-8
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-37
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.3E-13
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 8.7E-8
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-37
Sequence
Target Sequence 
>C. ELEGANS:194207_X_AT
gttggtcaacggatcctttgcatgcacggaggaatctcccaaaactgtaactcgtgggaa
tcattcaaagctctgaagaaaccgaatactccattaacctgtgacgaaggtcttcaagtt
gatttgatgtgggctgatccaactcaggataagtgcaacacgtttgcaatgaacaagcag
cgtgcaatttctgtagttttcggccaaaaaggattggatgatttcttgaagaagcttggc
ctctcgttgattgtccgagctcacgaagtgtctcaggaaggattcaacttcttgttcaac
aaaaagtgtgtcacagtgttctctgcgccatattattgtgggaatgataccaattgtgga
gcgattatgcacgtctcggattcttacgagctatccttcacagttctccgtccacgaatg
attgcaacaccagagaattttgaaattgtaaagctcatggagaacaactacaaagggctg
atggtcgcgagtccagatccagaccgtggtcgtcatttgcaatctgctgatgttccccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGTCAACGGATCCTTTGCATGC 339 433 389 Antisense
GTGCAATTTCTGTAGTTTTCGGCCA 581 481 570 Antisense
TTGGCCTCTCGTTGATTGTCCGAGC 425 709 624 Antisense
GTCCGAGCTCACGAAGTGTCTCAGG 27 477 641 Antisense
ACAGTGTTCTCTGCGCCATATTATT 554 107 701 Antisense
GATTATGCACGTCTCGGATTCTTAC 403 429 751 Antisense
TTACGAGCTATCCTTCACAGTTCTC 21 683 772 Antisense
ACAGTTCTCCGTCCACGAATGATTG 690 107 788 Antisense
TGATGGTCGCGAGTCCAGATCCAGA 103 567 867 Antisense
AGACCGTGGTCGTCATTTGCAATCT 42 71 889 Antisense
TTTGCAATCTGCTGATGTTCCCCAG 685 665 904 Antisense
Sequence Source Affymetrix Proprietary Database