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[194206_x_at]

Description CEK034G8R_rc /REP_DB=TREMBL Accession /GB=D33699 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34g8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 84      6grp_total > 47      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 500
1 2 3 4 range
A 886.6
(2.4)
P 		439.8
(-3)
P 		467.1
(-2.7)
P 		939.7
(3)
P 		500
B 848
(2.1)
P 		465.9
(-3)
P 		574.5
(-1.5)
P 		912.6
(3)
P 		447
C 750
(1.2)
P 		511.9
(-3)
P 		630
(-0.9)
P 		855.2
(3)
P 		343
avr 828.2
(2) 		472.5
(-3) 		557.2
(-1.8) 		902.5
(3) 		430

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 487
1 2 3 4 5 6 range
A 863
(3)
P 		711.4
(0.6)
P 		478.3
(-3)
P 		552.6
(-1.8)
P 		488.8
(-2.8)
P 		855.5
(2.9)
P 		385
B 697.7
(1.8)
P 		735
(2.5)
P 		766.4
(3)
P 		423.4
(-3)
P 		736.1
(2.5)
P 		766
(3)
P 		343
C 761.7
(1.1)
P 		755.3
(1.1)
P 		437.4
(-2.9)
P 		545.3
(-1.6)
P 		430.4
(-3)
P 		910.7
(3)
P 		480
avr 774.1
(1.8) 		733.9
(1) 		560.7
(-2) 		507.1
(-3) 		551.8
(-2.2) 		844.1
(3) 		337
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 322.8
(3)
P 		95.5
(-3)
P 		122.1
(-2.3)
P 		137.6
(-1.9)
P 		227
B 270.4
(3)
P 		115.1
(-3)
P 		133.1
(-2.3)
P 		194.5
(0.1)
P 		155
C 248.3
(3)
P 		147.2
(-2.8)
P 		219.6
(1.3)
P 		144.2
(-3)
P 		104
avr 280.5
(3) 		119.3
(-3) 		158.3
(-1.5) 		158.8
(-1.5) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 159.1
(-0.8)
P 		253
(3)
P 		104.2
(-3)
P 		140.1
(-1.6)
P 		147.5
(-1.3)
P 		208.3
(1.2)
P 		149
B 242.8
(1.2)
P 		244.7
(1.3)
P 		186.1
(-0.6)
P 		112.1
(-3)
P 		299
(3)
P 		285.6
(2.6)
P 		187
C 282.3
(2.3)
P 		230.5
(0.7)
P 		111.3
(-3)
P 		109.7
(-3)
P 		139.3
(-2.1)
P 		304.9
(3)
P 		195
avr 228.1
(1.4) 		242.7
(2) 		133.9
(-2.5) 		120.6
(-3) 		195.3
(0.1) 		266.3
(3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194206_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20401
Sequence Type Exemplar sequence
Representative Public ID CEK034G8R NCBI
Target Description CEK034G8R_rc /REP_DB=TREMBL Accession /GB=D33699 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059204 NCBI Caenorhabditis elegans C09D4.4c (C09D4.4) mRNA, complete cds. 11/11 None
C09D4.4c ENSEMBL cdna:known chromosome:CEL140:I:5479553:5484646:-1 gene:C09D4.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172200 3 1 NM_059204 194206_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5479564-5479925(-) 83.66 100.0
Public Domain and Genome References
Ensembl C09D4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68957 Hypothetical protein C09D4.4c [Caenorhabditis elegans] ref|NP_491605.2| C09D4.4c [Caenorhabditis elegans] 0.0
blast AAP68955 Hypothetical protein C09D4.4a [Caenorhabditis elegans] ref|NP_491607.2| C09D4.4a [Caenorhabditis elegans] 0.0
blast AAP68956 Hypothetical protein C09D4.4b [Caenorhabditis elegans] ref|NP_491606.2| C09D4.4b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007751 EMBL-EBI Protein of unknown function DUF676 1.8E-96
Sequence
Target Sequence 
>C. ELEGANS:194206_X_AT
gtaatcacattttttggtccaacctcttcttttttttttatcatgtcgccatcactactt
atcacacattccatcattctcaggctattgcattccaactttttatttcaaatttcccgt
tttttctcttcagttgcccttcccgattcatcattccaaaaattcaatttttctttttcc
gatgacgtgtaaatctagcttcagaatccagacaatttcagcttttttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATCACATTTTTTGGTCCAACCT 543 461 72 Antisense
TCTTCTTTTTTTTTTATCATGTCGC 253 617 96 Antisense
TATCATGTCGCCATCACTACTTATC 643 659 110 Antisense
ATCACTACTTATCACACATTCCATC 75 29 122 Antisense
ATCACACATTCCATCATTCTCAGGC 7 29 132 Antisense
CATTCTCAGGCTATTGCATTCCAAC 313 217 146 Antisense
GGCTATTGCATTCCAACTTTTTATT 357 537 154 Antisense
CCTTCCCGATTCATCATTCCAAAAA 267 269 209 Antisense
CAATTTTTCTTTTTCCGATGACGTG 331 179 236 Antisense
GTAAATCTAGCTTCAGAATCCAGAC 450 461 260 Antisense
TCCAGACAATTTCAGCTTTTTTCAA 183 591 278 Antisense
Sequence Source Affymetrix Proprietary Database