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[194203_x_at]

Description C40277 /REP_DB=TREMBL Accession /GB=C40277 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk237b2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 0      6grp_highest_nonorm > 14      6grp_total > 04      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6596
1 2 3 4 range
A 62.6
(-3)
A 		4956.8
(1.5)
P 		6658.2
(3)
P 		154.9
(-2.9)
P 		6596
B 70.9
(-3)
A 		5406.3
(2)
P 		6420.3
(3)
P 		136.3
(-2.9)
P 		6349
C 97.7
(-3)
A 		5709.9
(2.2)
P 		6607.2
(3)
P 		142.8
(-3)
P 		6510
avr 77.1
(-3) 		5357.7
(1.9) 		6561.9
(3) 		144.7
(-2.9) 		6485

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4867
1 2 3 4 5 6 range
A 5805.5
(3)
P 		3928.3
(0.6)
P 		3185.4
(-0.3)
P 		3779.7
(0.4)
P 		3579.7
(0.2)
P 		1059.9
(-3)
P 		4746
B 5381.8
(3)
P 		3846.5
(0.9)
P 		2691.1
(-0.7)
P 		5173.3
(2.7)
P 		2604.6
(-0.8)
P 		1010.8
(-3)
P 		4371
C 4469.9
(3)
P 		4037.2
(2.3)
P 		3995.2
(2.2)
P 		3078.5
(0.6)
P 		2942.3
(0.4)
P 		939
(-3)
P 		3531
avr 5219.1
(3) 		3937.3
(1.2) 		3290.6
(0.3) 		4010.5
(1.3) 		3042.2
(-0.1) 		1003.2
(-3) 		4216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2280
1 2 3 4 range
A 22.8
(-3)
A 		1076
(0.7)
P 		1740.6
(3)
P 		22.7
(-3)
P 		1718
B 22.6
(-3)
A 		1335.2
(2.4)
P 		1487.7
(3)
P 		29
(-3)
P 		1465
C 32.3
(-3)
A 		1641.6
(1.3)
P 		2302.8
(3)
P 		24.1
(-3)
P 		2279
avr 25.9
(-3) 		1350.9
(1.4) 		1843.7
(3) 		25.3
(-3) 		1818

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1615
1 2 3 4 5 6 range
A 1070.2
(1.3)
P 		1397.1
(3)
P 		693.7
(-0.7)
P 		958.6
(0.7)
P 		1080.2
(1.3)
P 		258.1
(-3)
P 		1139
B 1872.6
(3)
P 		1280.3
(0.6)
P 		653.5
(-1.9)
P 		1370.2
(1)
P 		1058.2
(-0.3)
P 		376.9
(-3)
P 		1496
C 1656.8
(3)
P 		1231.9
(1.1)
P 		1016.8
(0.1)
P 		619.1
(-1.6)
P 		952.1
(-0.1)
P 		314.3
(-3)
P 		1343
avr 1533.2
(3) 		1303.1
(1.9) 		788
(-0.7) 		982.6
(0.3) 		1030.2
(0.5) 		316.4
(-3) 		1217
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194203_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22041
Sequence Type Exemplar sequence
Representative Public ID C40277 NCBI
Target Description C40277 /REP_DB=TREMBL Accession /GB=C40277 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk237b2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077448(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077448 NCBI Caenorhabditis elegans W04G3.8 (W04G3.8) mRNA, complete cds. 10/11 A 
W04G3.8.1 ENSEMBL cdna:known chromosome:CEL140:X:11057358:11059720:1 gene:W04G3.8 10/11 A 
W04G3.8.2 ENSEMBL cdna:known chromosome:CEL140:X:11057358:11059824:1 gene:W04G3.8 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042834 3/11 Cross Hyb Matching Probes None
SNAP00000042819 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11059290-11059677(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04G3.8
Entrez Gene 181295 Entrez gene
SwissProt Q93200 EMBL-EBI
WormBase CE19004 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92030 Hypothetical protein W04G3.8 [Caenorhabditis elegans] emb|CAB01721.1| Hypothetical protein W04G3.8 [Caenorhabditis elegans] ref|NP_509849.1| W04G3.8 [Caenorhabditis elegans] 0.0
blast CAE70760 Hypothetical protein CBG17509 [Caenorhabditis briggsae] 0.0
blast CAA92025 Hypothetical protein W04G3.3 [Caenorhabditis elegans] ref|NP_509852.2| W04G3.3 [Caenorhabditis elegans] 6.0E-45
Sequence
Target Sequence 
>C. ELEGANS:194203_X_AT
aagttctccgttggcttgaagaccaaggattcatcaacggatttatcagagcattcaacc
ttctccaaccagctggatactcaacctgtcaatacgcagactcgacttttgaagttttcg
gaaagtaaatccaaccacagtcaacgagtacattgggccctcagtcgcacccaccaaatt
aatttttactgaaaaatctcttaaatgacctctttctccttctcacttttattgcctatt
ttttcgccaaacattcccgcatcagtttgcaattacttgttgttgtaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTCTCCGTTGGCTTGAAGACCA 228 157 16 Antisense
TATCAGAGCATTCAACCTTCTCCAA 409 659 59 Antisense
CCTTCTCCAACCAGCTGGATACTCA 478 269 74 Antisense
TGGATACTCAACCTGTCAATACGCA 324 551 89 Antisense
GTAAATCCAACCACAGTCAACGAGT 651 459 140 Antisense
TCAACGAGTACATTGGGCCCTCAGT 623 629 156 Antisense
AATCTCTTAAATGACCTCTTTCTCC 593 169 210 Antisense
CCTTCTCACTTTTATTGCCTATTTT 240 269 233 Antisense
TGCCTATTTTTTCGCCAAACATTCC 480 585 248 Antisense
AACATTCCCGCATCAGTTTGCAATT 699 137 265 Antisense
GTTTGCAATTACTTGTTGTTGTACA 530 451 280 Antisense
Sequence Source Affymetrix Proprietary Database