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[194200_x_at]

Description CEK090AYR_rc /REP_DB=TREMBL Accession /GB=D72114 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk90a11 : 3prime end, single read.
Cluster 6grp_total > 76      4grp_total > 31      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10.6
(3)
A 		7.3
(0.4)
A 		8.6
(1.4)
A 		3
(-3)
A 		8
B 5.6
(-1.1)
A 		3.9
(-3)
A 		4.1
(-2.8)
A 		9.4
(3)
A 		6
C 4.7
(2.4)
A 		3.6
(0.1)
A 		2.1
(-3)
A 		5
(3)
A 		3
avr 7
(3) 		4.9
(-3) 		4.9
(-3) 		5.8
(-0.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 4.1
(-3)
A 		5.9
(-1.4)
A 		6.1
(-1.2)
A 		10.1
(2.3)
A 		8.3
(0.7)
A 		10.9
(3)
A 		7
B 1.8
(-3)
A 		2
(-2.9)
A 		4.2
(-2.2)
A 		7.8
(-0.9)
A 		2.9
(-2.6)
A 		19
(3)
A 		17
C 5.5
(-2.6)
A 		6.9
(-2.2)
A 		3.5
(-3)
A 		8.2
(-2)
A 		5.5
(-2.6)
A 		30.4
(3)
A 		27
avr 3.8
(-3) 		4.9
(-2.6) 		4.6
(-2.7) 		8.7
(-1.2) 		5.6
(-2.3) 		20.1
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3.9
(3)
A 		1.6
(-0.9)
A 		2.3
(0.3)
A 		0.4
(-3)
A 		4
B 1.8
(1.9)
A 		1
(-2.5)
A 		0.9
(-3)
A 		2
(3)
A 		1
C 1.6
(3)
A 		1
(-1)
A 		0.7
(-3)
A 		0.8
(-2.3)
A 		1
avr 2.4
(3) 		1.2
(-2.5) 		1.3
(-2.1) 		1.1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.1
(1.1)
A 		1.3
(-1.4)
A 		2.6
(2.7)
A 		2.5
(2.4)
A 		2.7
(3)
A 		2
B 0.6
(-3)
A 		0.7
(-2.9)
A 		1
(-2.6)
A 		2.1
(-1.6)
A 		1.2
(-2.4)
A 		7.1
(3)
A 		7
C 2
(-2.3)
A 		2.1
(-2.2)
A 		0.9
(-3)
A 		1.6
(-2.5)
A 		1.8
(-2.4)
A 		10.2
(3)
A 		9
avr 1.1
(-3) 		1.6
(-2.5) 		1.1
(-3) 		2.1
(-1.9) 		1.8
(-2.3) 		6.7
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194200_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20929
Sequence Type Exemplar sequence
Representative Public ID CEK090AYR NCBI
Target Description CEK090AYR_rc /REP_DB=TREMBL Accession /GB=D72114 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk90a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067188
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000020083 ENSEMBL cdna:SNAP chromosome:CEL140:III:12224508:12235524:-1 None
GENEFINDER00000020178 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12224508:12225206:-1 None
Y75B8A.17 ENSEMBL cdna:known chromosome:CEL140:III:12224508:12225206:-1 gene:Y75B8A.17 A 
NM_067188 NCBI Caenorhabditis elegans GeMiNin homolog family member (gmn-1) (gmn-1) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12223779-12224657(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gmn-1
Ensembl Y75B8A.17
Entrez Gene 176651 Entrez gene
SwissProt Q9XW85 EMBL-EBI
WormBase CE23028 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22084 Hypothetical protein Y75B8A.17 [Caenorhabditis elegans] ref|NP_499589.1| GeMiNin homolog family member (gmn-1) [Caenorhabditis elegans] dbj|BAD98298.1| geminin homolog [Caenorhabditis elegans] 8.0E-89
blast CAA22084 Hypothetical protein Y75B8A.17 [Caenorhabditis elegans] ref|NP_499589.1| GeMiNin homolog family member (gmn-1) [Caenorhabditis elegans] dbj|BAD98298.1| geminin homolog [Caenorhabditis elegans] 4.0E-88
blast CAA22086 Hypothetical protein Y75B8A.20 [Caenorhabditis elegans] ref|NP_499592.1| GRound-Like (grd related) family member (grl-15) [Caenorhabditis elegans] 6.0E-62
blast CAE56552 Hypothetical protein CBG24285 [Caenorhabditis briggsae] 3.0E-47
blast CAE75121 Hypothetical protein CBG23049 [Caenorhabditis briggsae] 6.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 6.6E-27
Sequence
Target Sequence 
>C. ELEGANS:194200_X_AT
ggacagaaatcagcgtctcgtcgccgaactcggagatctcgacgaaaaaatgcgaaaaat
cgacgatgacacggagattcttctcgaagtgctcgccgacattgacgaggagcaacagac
ggatgaggagattgcaagcgcgctcgaataattattcggcttcgaggggagcgtgctacc
tcgtgtttatatatatcttgtgtatttacttcattcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAGAAATCAGCGTCTCGTCGCC 520 525 16 Antisense
TCGCCGAACTCGGAGATCTCGACGA 659 599 36 Antisense
CGACGATGACACGGAGATTCTTCTC 501 251 76 Antisense
GGAGATTCTTCTCGAAGTGCTCGCC 1 519 88 Antisense
GTGCTCGCCGACATTGACGAGGAGC 680 477 104 Antisense
CGGATGAGGAGATTGCAAGCGCGCT 363 243 135 Antisense
GAGATTGCAAGCGCGCTCGAATAAT 140 397 143 Antisense
GCGCGCTCGAATAATTATTCGGCTT 11 287 153 Antisense
TATTCGGCTTCGAGGGGAGCGTGCT 615 663 168 Antisense
AGCGTGCTACCTCGTGTTTATATAT 700 81 185 Antisense
ATCTTGTGTATTTACTTCATTCCTT 396 31 210 Antisense
Sequence Source Affymetrix Proprietary Database