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[194198_x_at]

Description CEK009H2R_rc /REP_DB=TREMBL Accession /GB=D28103 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk9h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_highest_8_8 > 07      4grp_high_8_8 > 29      6grp_highest_nonorm > 94      6grp_total > 59      4grp_total > 27      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 405.3
(-1.7)
P 		568.8
(3)
P 		360.9
(-3)
P 		503.1
(1.1)
P 		208
B 381.4
(-3)
P 		495.6
(0.6)
P 		403.7
(-2.3)
P 		574
(3)
P 		193
C 446.7
(-3)
P 		456.9
(-1.8)
P 		478.7
(0.8)
P 		497.6
(3)
P 		51
avr 411.1
(-3) 		507.1
(2.1) 		414.4
(-2.8) 		524.9
(3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 857
1 2 3 4 5 6 range
A 815.4
(1.8)
P 		528.7
(-1.5)
P 		393.6
(-3)
P 		393.4
(-3)
P 		600.7
(-0.6)
P 		920.5
(3)
P 		527
B 767.3
(1)
P 		569
(-1)
P 		381.4
(-3)
P 		446.1
(-2.3)
P 		506.1
(-1.7)
P 		954.5
(3)
P 		573
C 666.5
(-0.1)
P 		444.1
(-1.7)
P 		366.5
(-2.2)
P 		255.8
(-3)
P 		603.9
(-0.6)
P 		1113.2
(3)
P 		857
avr 749.7
(0.7) 		513.9
(-1.6) 		380.5
(-2.9) 		365.1
(-3) 		570.2
(-1) 		996.1
(3) 		631
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 147.6
(3)
P 		123.5
(1)
P 		94.3
(-1.3)
P 		73.6
(-3)
P 		74
B 121.6
(2.8)
P 		122.4
(3)
P 		93.6
(-3)
P 		122.3
(3)
P 		29
C 147.9
(1.6)
P 		131.4
(0.4)
P 		166.8
(3)
P 		83.9
(-3)
P 		83
avr 139
(3) 		125.8
(1.3) 		118.2
(0.3) 		93.3
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 150.3
(-0.2)
P 		188
(1.4)
P 		85.7
(-3)
P 		99.8
(-2.4)
P 		181.3
(1.1)
P 		224.1
(3)
P 		138
B 267
(1)
P 		189.4
(-0.8)
P 		92.6
(-3)
P 		118.1
(-2.4)
P 		205.6
(-0.4)
P 		355.9
(3)
P 		263
C 247
(0.7)
P 		135.5
(-1.4)
P 		93.3
(-2.2)
P 		51.4
(-3)
P 		195.4
(-0.3)
P 		372.7
(3)
P 		321
avr 221.4
(0.5) 		171
(-0.9) 		90.5
(-3) 		89.8
(-3) 		194.1
(-0.3) 		317.6
(3) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194198_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20334
Sequence Type Exemplar sequence
Representative Public ID CEK009H2R NCBI
Target Description CEK009H2R_rc /REP_DB=TREMBL Accession /GB=D28103 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk9h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F39B2.1 ENSEMBL cdna:known chromosome:CEL140:I:14799173:14802509:1 gene:F39B2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14802122-14802430(+) 92.21 100.0
Public Domain and Genome References
Ensembl F39B2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07382 Hypothetical protein F39B2.1 [Caenorhabditis elegans] ref|NP_493579.1| F39B2.1 [Caenorhabditis elegans] 0.0
blast CAE72531 Hypothetical protein CBG19711 [Caenorhabditis briggsae] 0.0
blast NP_001017764 hypothetical protein LOC550461 [Danio rerio] gb|AAH93191.1| Hypothetical protein LOC550461 [Danio rerio] 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.1E-5
Sequence
Target Sequence 
>C. ELEGANS:194198_X_AT
caattcttaccaaataatcgccttttttgttctatttattatgcttctatctattcgatc
tctcgctctatccattctttccttattactacacccctctcaccaagttgtcttacaatc
aatcgatcgatgccccaattcactttaaacacgtatgccacgtgtcttctcccacaaaca
catttgatatatacttgtactgtttgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTCTTACCAAATAATCGCCTTT 422 179 36 Antisense
TCGCCTTTTTTGTTCTATTTATTAT 189 599 53 Antisense
TATGCTTCTATCTATTCGATCTCTC 588 657 75 Antisense
TATCCATTCTTTCCTTATTACTACA 314 657 104 Antisense
CCCTCTCACCAAGTTGTCTTACAAT 550 259 130 Antisense
AATCAATCGATCGATGCCCCAATTC 559 169 152 Antisense
TCGATGCCCCAATTCACTTTAAACA 483 603 162 Antisense
ATTCACTTTAAACACGTATGCCACG 565 9 173 Antisense
AACACGTATGCCACGTGTCTTCTCC 284 135 183 Antisense
TGTCTTCTCCCACAAACACATTTGA 665 557 198 Antisense
TGATATATACTTGTACTGTTTGCAA 559 563 220 Antisense
Sequence Source Affymetrix Proprietary Database