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[194197_x_at]

Description AW057245 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y46G5A.22A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AW057245 /WB_GENE_ID=Y46G5A.22A /WP=CE21999 /CHR=2 /FEA=Genomic Cluster /DEF=ca02g01.y1 C elegans fem3 Q23 S1 Caenorhabditis elegans cDNA 5prime, mRNA sequence.
Cluster 6grp_total > 98      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 10.5
(-3)
A 		55
(2)
A 		56.9
(2.2)
A 		63.8
(3)
A 		53
B 22.1
(-3)
A 		53.6
(0.3)
A 		79.2
(3)
A 		55.1
(0.5)
A 		57
C 9.4
(-3)
A 		11.2
(-2.8)
A 		40.3
(0.7)
A 		59.6
(3)
A 		50
avr 14
(-3) 		39.9
(0.4) 		58.8
(2.9) 		59.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 7
(-3)
A 		6.1
(-3)
A 		12.2
(-2.7)
A 		66.3
(-0.4)
A 		106
(1.3)
A 		146.7
(3)
A 		141
B 27.7
(-1.8)
A 		10
(-2.9)
A 		28.5
(-1.8)
A 		8.7
(-3)
A 		84.4
(1.8)
A 		103.9
(3)
A 		95
C 32.6
(-1.9)
A 		11.5
(-3)
A 		13.5
(-2.9)
A 		40.6
(-1.4)
A 		121.6
(3)
A 		72.9
(0.3)
A 		110
avr 22.4
(-2.2) 		9.2
(-3) 		18.1
(-2.5) 		38.5
(-1.2) 		104
(2.8) 		107.8
(3) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.8
(-3)
A 		11.9
(1.4)
A 		14.9
(3)
A 		9.3
(-0)
A 		11
B 7.1
(-3)
A 		13.2
(0.2)
A 		18.4
(3)
A 		11.7
(-0.6)
A 		11
C 3.1
(-3)
A 		3.2
(-2.9)
A 		14
(3)
A 		10
(0.8)
A 		11
avr 4.7
(-3) 		9.4
(-0.5) 		15.8
(3) 		10.3
(0) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 1.3
(-3)
A 		2.2
(-2.8)
A 		2.7
(-2.8)
A 		16.8
(-0.3)
A 		32
(2.4)
A 		35.7
(3)
A 		34
B 9.6
(-1.8)
A 		3.3
(-2.8)
A 		6.9
(-2.2)
A 		2.3
(-3)
A 		34.3
(2.3)
A 		38.8
(3)
A 		37
C 12.1
(-1.5)
A 		3.5
(-3)
A 		3.4
(-3)
A 		8.2
(-2.2)
A 		39.3
(3)
A 		24.4
(0.5)
A 		36
avr 7.7
(-2.1) 		3
(-3) 		4.3
(-2.8) 		9.1
(-1.9) 		35.2
(3) 		33
(2.6) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194197_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23331
Sequence Type Exemplar sequence
Representative Public ID AW057245 NCBI
Target Description AW057245 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y46G5A.22A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AW057245 /WB_GENE_ID=Y46G5A.22A /WP=CE21999 /CHR=2 /FEA=Genomic Cluster /DEF=ca02g01.y1 C elegans fem3 Q23 S1 Caenorhabditis elegans cDNA 5prime, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064326(11), NM_064325(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064326 NCBI Caenorhabditis elegans Y46G5A.22b (Y46G5A.22) mRNA, complete cds. 11/11 A 
NM_064325 NCBI Caenorhabditis elegans Y46G5A.22a (Y46G5A.22) mRNA, complete cds. 9/11 A 
SNAP00000039001 ENSEMBL cdna:SNAP chromosome:CEL140:II:12816837:12818302:-1 9/11 None
GENEFINDER00000039024 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12816837:12818444:-1 9/11 None
Y46G5A.22b ENSEMBL cdna:known chromosome:CEL140:II:12816737:12818450:-1 gene:Y46G5A.22 11/11 A 
Y46G5A.22a ENSEMBL cdna:known chromosome:CEL140:II:12816777:12818444:-1 gene:Y46G5A.22 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12816834-12818442(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y46G5A.22
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60364 Hypothetical protein Y46G5A.22a [Caenorhabditis elegans] ref|NP_496726.1| Y46G5A.22a [Caenorhabditis elegans] 1.0E-148
blast CAB60364 Hypothetical protein Y46G5A.22a [Caenorhabditis elegans] ref|NP_496726.1| Y46G5A.22a [Caenorhabditis elegans] 1.0E-143
blast CAB60365 Hypothetical protein Y46G5A.22b [Caenorhabditis elegans] ref|NP_496727.1| Y46G5A.22b [Caenorhabditis elegans] 1.0E-128
blast CAB60365 Hypothetical protein Y46G5A.22b [Caenorhabditis elegans] ref|NP_496727.1| Y46G5A.22b [Caenorhabditis elegans] 1.0E-121
blast CAB60364 Hypothetical protein Y46G5A.22a [Caenorhabditis elegans] ref|NP_496726.1| Y46G5A.22a [Caenorhabditis elegans] 1.0E-117
blast CAB60365 Hypothetical protein Y46G5A.22b [Caenorhabditis elegans] ref|NP_496727.1| Y46G5A.22b [Caenorhabditis elegans] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496727.1 2 194-216,226-245
NP_496726.1 2 194-216,226-245
Y46G5A.22b 2 194-216,226-245
Y46G5A.22a 2 194-216,226-245
SNAP00000039001 2 175-197,207-226
GENEFINDER00000039024 2 194-216,226-245
Sequence
Target Sequence 
>C. ELEGANS:194197_X_AT
ccatatccgagcactctacgtacacctactctacccatccggaacgttgctctcaggccg
gccgtacttctcgttcgaacagctattctgacgccacagatgccacatatcggactgaaa
actcgcagaatcgtcttcaaactctcggcaactgtgccacgtcgattggcaactttttcc
gcaacaatccgagattcaccaagctcgtgttcggcatcattctgtgctacttggtggttt
gcaacttggaaattctgattccacgtgtcattgctctcgtcgttaggctcagctatccgt
gggctcgctactgggccgtcgttgttgagcaattctttatgtcaattgccaatatgttca
ctagaatggatgcgatcattttggcctcctactgtgagtttgctgccagatactgccgtt
cgcgccgtctaatgtgtgacgtcacctgctcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATATCCGAGCACTCTACGTACAC 665 269 390 Antisense
GTTCGAACAGCTATTCTGACGCCAC 470 441 462 Antisense
GCCACAGATGCCACATATCGGACTG 393 279 482 Antisense
GCAGAATCGTCTTCAAACTCTCGGC 167 313 514 Antisense
CTCGGCAACTGTGCCACGTCGATTG 199 233 533 Antisense
TGGCAACTTTTTCCGCAACAATCCG 506 545 556 Antisense
TGTTCGGCATCATTCTGTGCTACTT 336 563 597 Antisense
ATTCTGATTCCACGTGTCATTGCTC 205 11 641 Antisense
TGGATGCGATCATTTTGGCCTCCTA 155 551 756 Antisense
GGCCTCCTACTGTGAGTTTGCTGCC 97 543 772 Antisense
CTAATGTGTGACGTCACCTGCTCGT 94 227 818 Antisense
Sequence Source Affymetrix Proprietary Database