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[194196_x_at]

Description CEK080H6F /REP_DB=TREMBL Accession /GB=D74429 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80h6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 52      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 27      6grp_total > 62      4grp_total > 56      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5894
1 2 3 4 range
A 6981.2
(-1.2)
P 		8873.5
(0.7)
P 		11086.9
(3)
P 		5193.2
(-3)
P 		5894
B 5394.4
(-3)
P 		8256.1
(0.4)
P 		10418.3
(3)
P 		6632.2
(-1.5)
P 		5024
C 6694.6
(-2.2)
P 		8228.4
(0.1)
P 		10189.2
(3)
P 		6140.9
(-3)
P 		4048
avr 6356.7
(-2.5) 		8452.7
(0.2) 		10564.8
(3) 		5988.8
(-3) 		4576

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6380
1 2 3 4 5 6 range
A 5078.4
(-2.3)
P 		6467.5
(-1)
P 		10677.6
(3)
P 		6235.3
(-1.2)
P 		5528.9
(-1.8)
P 		4298.1
(-3)
P 		6380
B 6704.8
(-3)
P 		8137.9
(1.2)
P 		8743.3
(3)
P 		7282
(-1.3)
P 		7746.9
(0.1)
P 		6721.9
(-2.9)
P 		2039
C 5879
(-1.8)
P 		7789.1
(3)
P 		5395.6
(-3)
P 		7660.5
(2.7)
P 		5988.3
(-1.5)
P 		7525.6
(2.3)
P 		2394
avr 5887.4
(-3) 		7464.8
(1) 		8272.2
(3) 		7059.3
(-0.1) 		6421.4
(-1.7) 		6181.9
(-2.3) 		2385
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2791
1 2 3 4 range
A 2541.9
(2)
P 		1926.2
(0.3)
P 		2898.3
(3)
P 		760.2
(-3)
P 		2138
B 1720.2
(-1.2)
P 		2039.1
(0.8)
P 		2414.2
(3)
P 		1413.3
(-3)
P 		1001
C 2216.1
(-0.2)
P 		2365.7
(0.2)
P 		3551.2
(3)
P 		1035.4
(-3)
P 		2516
avr 2159.4
(0.5) 		2110.3
(0.3) 		2954.6
(3) 		1069.6
(-3) 		1885

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2211
1 2 3 4 5 6 range
A 936.2
(-3)
P 		2300.2
(2.9)
P 		2325.4
(3)
P 		1581.4
(-0.2)
P 		1668.4
(0.2)
P 		1046.4
(-2.5)
P 		1389
B 2332.9
(-1)
P 		2708.8
(0.8)
P 		2123.1
(-2)
P 		1928.8
(-3)
P 		3147.5
(3)
P 		2506.6
(-0.2)
P 		1219
C 2179.1
(1.2)
P 		2376.7
(2.3)
P 		1373.3
(-3)
P 		1540.5
(-2.1)
P 		1937.7
(-0)
P 		2519.2
(3)
P 		1146
avr 1816.1
(-2) 		2461.9
(3) 		1940.6
(-1) 		1683.6
(-3) 		2251.2
(1.4) 		2024.1
(-0.4) 		778
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194196_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20141
Sequence Type Exemplar sequence
Representative Public ID CEK080H6F NCBI
Target Description CEK080H6F /REP_DB=TREMBL Accession /GB=D74429 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80h6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK080H6F
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK080H6F CEK080H6F /REP_DB=TREMBL Accession /GB=D74429 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80h6 : 5prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4789243-4789573(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:194196_X_AT
cccgtcgcggagatcgtcaaacatgagagagaagtggcgtaagaagcgtatgcgtcgcct
gaagcgcaagaggagagccgcaaagaagtagacaagctgcttcatctccaagacgtcaaa
ttatgctgccgatctgtgatctcgacttcaccgtcttctccacaattgtcaactggatta
ctcgtcttcttgtgcttctcatcgtgaaataatcatcctacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGTCGCGGAGATCGTCAAACATG 202 261 14 Antisense
GCGTAAGAAGCGTATGCGTCGCCTG 569 289 50 Antisense
GCGTCGCCTGAAGCGCAAGAGGAGA 103 293 65 Antisense
GTAGACAAGCTGCTTCATCTCCAAG 14 457 101 Antisense
CTCCAAGACGTCAAATTATGCTGCC 5 237 119 Antisense
TATGCTGCCGATCTGTGATCTCGAC 278 655 135 Antisense
CGTCTTCTCCACAATTGTCAACTGG 288 247 165 Antisense
TGTCAACTGGATTACTCGTCTTCTT 513 559 180 Antisense
CAACTGGATTACTCGTCTTCTTGTG 692 187 183 Antisense
TCTTCTTGTGCTTCTCATCGTGAAA 84 617 198 Antisense
TCATCGTGAAATAATCATCCTACAA 367 621 212 Antisense
Sequence Source Affymetrix Proprietary Database