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[194194_x_at]

Description C64370 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y44E3A.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C64370 /WB_GENE_ID=Y44E3A.6 /WP=CE21931 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk358b5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 85      6grp_total > 47      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 484
1 2 3 4 range
A 949.2
(3)
P 		832.7
(1.5)
P 		686
(-0.5)
P 		492.7
(-3)
P 		457
B 976.3
(3)
P 		656.9
(-2.4)
P 		710.4
(-1.5)
P 		621.8
(-3)
P 		355
C 912.4
(3)
P 		692.3
(-0.8)
P 		752.1
(0.2)
P 		564.1
(-3)
P 		348
avr 946
(3) 		727.3
(-0.4) 		716.2
(-0.6) 		559.5
(-3) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 517
1 2 3 4 5 6 range
A 795.9
(1.2)
P 		876.6
(3)
P 		621.4
(-2.8)
P 		614.3
(-3)
P 		752.3
(0.2)
P 		859.6
(2.6)
P 		262
B 930
(3)
P 		865.7
(1.2)
P 		789.6
(-0.9)
P 		716.1
(-3)
P 		762.2
(-1.7)
P 		873
(1.4)
P 		214
C 818.9
(-0.7)
P 		759.1
(-1.4)
P 		720
(-1.8)
P 		618.6
(-3)
P 		633.8
(-2.8)
P 		1131.6
(3)
P 		513
avr 848.3
(0.9) 		833.8
(0.6) 		710.3
(-1.8) 		649.7
(-3) 		716.1
(-1.7) 		954.7
(3) 		305
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 345.6
(3)
P 		180.8
(-0.6)
P 		179.3
(-0.6)
P 		72.1
(-3)
P 		274
B 311.3
(3)
P 		162.2
(-2)
P 		164.6
(-1.9)
P 		132.5
(-3)
P 		179
C 302
(3)
P 		199
(0)
P 		262.1
(1.8)
P 		95.1
(-3)
P 		207
avr 319.6
(3) 		180.7
(-0.8) 		202
(-0.2) 		99.9
(-3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 146.7
(-2.6)
P 		311.7
(3)
P 		135.3
(-3)
P 		155.8
(-2.3)
P 		227
(0.1)
P 		209.3
(-0.5)
P 		176
B 323.6
(2.9)
P 		288.1
(1.3)
P 		191.7
(-2.9)
P 		189.7
(-3)
P 		309.7
(2.3)
P 		325.5
(3)
P 		136
C 303.5
(1.2)
P 		231.6
(-0.5)
P 		183.3
(-1.6)
P 		124.4
(-3)
P 		205.1
(-1.1)
P 		378.8
(3)
P 		254
avr 257.9
(1.1) 		277.1
(1.9) 		170.1
(-2.5) 		156.6
(-3) 		247.3
(0.7) 		304.5
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194194_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22556
Sequence Type Exemplar sequence
Representative Public ID C64370 NCBI
Target Description C64370 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y44E3A.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C64370 /WB_GENE_ID=Y44E3A.6 /WP=CE21931 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk358b5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171835, NM_170842
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170842 NCBI Caenorhabditis elegans Y44E3A.6a (Y44E3A.6) mRNA, complete cds. A 
NM_171835 NCBI Caenorhabditis elegans Y44E3A.6b (Y44E3A.6) mRNA, complete cds. A 
Y44E3A.6b ENSEMBL cdna:known chromosome:CEL140:I:3340278:3349901:-1 gene:Y44E3A.6 A 
Y44E3A.6a ENSEMBL cdna:known chromosome:CEL140:I:3340227:3349892:-1 gene:Y44E3A.6 A 
SNAP00000029369 ENSEMBL cdna:SNAP chromosome:CEL140:I:3348355:3350544:-1 None
GENEFINDER00000029379 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3348487:3350544:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3340237-3350545(-) 97.76 100.0
Public Domain and Genome References
Ensembl Y44E3A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740827 Y44E3A.6a [Caenorhabditis elegans] gb|AAN73852.1| Hypothetical protein Y44E3A.6a [Caenorhabditis elegans] 0.0
blast NP_740828 Y44E3A.6b [Caenorhabditis elegans] gb|AAN73853.1| Hypothetical protein Y44E3A.6b [Caenorhabditis elegans] 0.0
blast T33847 hypothetical protein Y44E3A.6 - Caenorhabditis elegans 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029379 1 87-109
Sequence
Target Sequence 
>C. ELEGANS:194194_X_AT
gctctccaggataccccgaaaaatgctgaaataatttttcaaataactgaaaaattgaga
gaaaaaagatttttaatttttattcaaaaaaatcgcttaaaaaagcggccaattttaata
atttcgaacgaaataacacaaaaattcgatttcactgaactaatggagaacacagccgac
gagcctgtccgccgttatgtccgacttctctaccaaatgacacgttcctcacttcttcag
ccgccaactccgtcgcaaagaactgcagctctgtcaaaattcctctcggatcactcgcag
caatgatttgttctacgacttcagccggctccgaccgaccaaaaaaaaacaattttttct
tattacaaattaaccaaatctctcagattctcagttttacattgaccgttttcatttttt
ttttcgtatttttcaagaaaagaagcacaaaaaaaggaaaaaatgctcaaaattttaaat
tttttcttatttttttcaccaattctcgctgtaactaatagttgtgattagacccctatc
catcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTCCAGGATACCCCGAAAAATG 86 301 2507 Antisense
AATGGAGAACACAGCCGACGAGCCT 646 161 2668 Antisense
ATGTCCGACTTCTCTACCAAATGAC 409 47 2703 Antisense
GCCAACTCCGTCGCAAAGAACTGCA 48 279 2749 Antisense
ACTGCAGCTCTGTCAAAATTCCTCT 540 97 2768 Antisense
CACTCGCAGCAATGATTTGTTCTAC 156 199 2798 Antisense
ATGATTTGTTCTACGACTTCAGCCG 57 47 2809 Antisense
AATCTCTCAGATTCTCAGTTTTACA 605 169 2883 Antisense
TCAGTTTTACATTGACCGTTTTCAT 537 621 2897 Antisense
TTTTTTCACCAATTCTCGCTGTAAC 599 675 2997 Antisense
TTGTGATTAGACCCCTATCCATCTA 299 709 3028 Antisense
Sequence Source Affymetrix Proprietary Database