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[194193_x_at]

Description CEK105DYR_rc /REP_DB=TREMBL Accession /GB=D72583 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk105d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 94      6grp_total > 97      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 481.3
(-1.3)
P 		399
(-3)
P 		484.9
(-1.2)
P 		691.2
(3)
P 		292
B 451.5
(-2.6)
P 		433
(-3)
P 		443.2
(-2.8)
P 		703.2
(3)
P 		270
C 516.7
(-0.2)
P 		460.5
(-1.8)
P 		419.1
(-3)
P 		628.6
(3)
P 		210
avr 483.2
(-1.7) 		430.8
(-3) 		449.1
(-2.5) 		674.3
(3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 501
1 2 3 4 5 6 range
A 484.7
(-0.8)
P 		436.8
(-1.7)
P 		458.2
(-1.3)
P 		358.5
(-3)
P 		708.5
(3)
P 		656.5
(2.1)
P 		350
B 411.5
(-2.1)
P 		389.9
(-2.4)
P 		337.1
(-3)
P 		533.9
(-0.6)
P 		617.4
(0.4)
P 		833.2
(3)
P 		496
C 424.7
(-1.6)
P 		413.5
(-1.8)
P 		331.9
(-3)
P 		514.2
(-0.2)
P 		474.1
(-0.8)
P 		726.2
(3)
P 		394
avr 440.3
(-1.9) 		413.4
(-2.4) 		375.7
(-3) 		468.9
(-1.5) 		600
(0.7) 		738.6
(3) 		363
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 175.3
(3)
P 		86.6
(-3)
P 		126.8
(-0.3)
P 		101.2
(-2)
P 		89
B 144
(2.3)
P 		106.9
(-2.5)
P 		102.7
(-3)
P 		149.8
(3)
P 		47
C 171
(3)
P 		132.4
(-0.6)
P 		146.1
(0.7)
P 		106
(-3)
P 		65
avr 163.4
(3) 		108.6
(-3) 		125.2
(-1.2) 		119
(-1.9) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 89.4
(-3)
P 		155.3
(0.2)
P 		99.8
(-2.5)
P 		90.9
(-2.9)
P 		213.8
(3)
P 		159.8
(0.4)
P 		124
B 143.2
(-1.4)
P 		129.8
(-1.7)
P 		81.9
(-3)
P 		141.4
(-1.4)
P 		250.8
(1.4)
P 		310.7
(3)
P 		229
C 157.4
(-0.2)
P 		126.2
(-1.4)
P 		84.5
(-3)
P 		103.4
(-2.3)
P 		153.4
(-0.4)
P 		243.1
(3)
P 		159
avr 130
(-1.3) 		137.1
(-1.1) 		88.7
(-3) 		111.9
(-2.1) 		206
(1.7) 		237.9
(3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194193_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20317
Sequence Type Exemplar sequence
Representative Public ID CEK105DYR NCBI
Target Description CEK105DYR_rc /REP_DB=TREMBL Accession /GB=D72583 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk105d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060935 NCBI Caenorhabditis elegans M01E5.4 (M01E5.4) mRNA, complete cds. 11/11 None
M01E5.4 ENSEMBL cdna:known chromosome:CEL140:I:13295683:13297659:-1 gene:M01E5.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13295623-13295954(-) 90.94 100.0
Public Domain and Genome References
Gene Title
Ensembl M01E5.4
Entrez Gene 173194 Entrez gene
SwissProt O45690 EMBL-EBI
WormBase CE12280 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07636 Hypothetical protein M01E5.4 [Caenorhabditis elegans] ref|NP_493336.1| M01E5.4 [Caenorhabditis elegans] 1.0E-108
blast CAE73001 Hypothetical protein CBG20350 [Caenorhabditis briggsae] 2.0E-61
Sequence
Target Sequence 
>C. ELEGANS:194193_X_AT
atcaagctctttttatattcactttttaaattcaagttttctgtttctcttttctctgtc
gctctctttgtcatttgttctcgatttccctgttttctcgtcatttccacattgactggt
gccgtttttttgtactttttatgtcgaaattaggcaaattttaggcctgtgatcgtgttt
tttctccttctgtgttttttttcgatatactcgcgccatcatatcgattttacttcttcg
gtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAAGCTCTTTTTATATTCACTTT 402 27 61 Antisense
TCAAGTTTTCTGTTTCTCTTTTCTC 48 633 92 Antisense
CTTTGTCATTTGTTCTCGATTTCCC 412 223 126 Antisense
GTTTTCTCGTCATTTCCACATTGAC 284 449 152 Antisense
TTGACTGGTGCCGTTTTTTTGTACT 557 705 172 Antisense
GCAAATTTTAGGCCTGTGATCGTGT 110 317 214 Antisense
TAGGCCTGTGATCGTGTTTTTTCTC 306 655 222 Antisense
TTCTCCTTCTGTGTTTTTTTTCGAT 215 691 242 Antisense
TTTTTTCGATATACTCGCGCCATCA 530 675 257 Antisense
ATACTCGCGCCATCATATCGATTTT 92 25 267 Antisense
TCATATCGATTTTACTTCTTCGGTT 583 619 279 Antisense
Sequence Source Affymetrix Proprietary Database