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[194190_x_at]

Description CEK116CZR_rc /REP_DB=TREMBL Accession /GB=D73254 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk116c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 92      6grp_total > 88      4grp_total > 60      6grp_highest_sub > Da      6grp_cgc > 59      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 175.9
(2.3)
P 		185.8
(3)
P 		166.3
(1.7)
P 		97
(-3)
P 		89
B 155.2
(2.1)
P 		153.9
(2.1)
P 		171.6
(3)
P 		58
(-3)
P 		114
C 147.7
(-0.4)
P 		201.5
(3)
P 		171.4
(1.1)
P 		107
(-3)
P 		95
avr 159.6
(1.7) 		180.4
(3) 		169.8
(2.3) 		87.3
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 518
1 2 3 4 5 6 range
A 187.7
(-1.8)
P 		125.7
(-2.6)
P 		96.6
(-3)
P 		115.7
(-2.8)
P 		399.1
(0.9)
P 		564.2
(3)
P 		468
B 184.5
(-2.3)
P 		180.3
(-2.4)
P 		130.4
(-3)
P 		154.7
(-2.7)
P 		358.1
(-0.2)
P 		614.2
(3)
P 		484
C 152.6
(-2.5)
P 		142
(-2.7)
P 		119.5
(-3)
P 		167.6
(-2.3)
P 		298.6
(-0.4)
P 		537.5
(3)
P 		418
avr 174.9
(-2.2) 		149.3
(-2.6) 		115.5
(-3) 		146
(-2.6) 		351.9
(0.1) 		572
(3) 		457
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 64
(3)
P 		40.3
(0.1)
P 		43.5
(0.5)
P 		14.2
(-3)
P 		50
B 49.5
(3)
P 		38
(1.1)
P 		39.8
(1.4)
P 		12.4
(-3)
P 		37
C 48.9
(1.4)
P 		57.9
(2.7)
P 		59.7
(3)
P 		18
(-3)
P 		42
avr 54.1
(3) 		45.4
(1.7) 		47.7
(2) 		14.9
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 34.6
(-2.3)
P 		44.7
(-1.8)
P 		21
(-3)
P 		29.3
(-2.6)
P 		120.4
(2.1)
P 		137.4
(3)
P 		116
B 64.2
(-2)
P 		60
(-2.1)
P 		31.7
(-3)
P 		41
(-2.7)
P 		145.5
(0.5)
P 		229
(3)
P 		197
C 56.5
(-2)
P 		43.3
(-2.5)
P 		30.4
(-3)
P 		33.7
(-2.9)
P 		96.6
(-0.3)
P 		179.9
(3)
P 		150
avr 51.8
(-2.1) 		49.3
(-2.2) 		27.7
(-3) 		34.7
(-2.7) 		120.8
(0.6) 		182.1
(3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194190_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20621
Sequence Type Exemplar sequence
Representative Public ID CEK116CZR NCBI
Target Description CEK116CZR_rc /REP_DB=TREMBL Accession /GB=D73254 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk116c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T19E10.1b ENSEMBL cdna:known chromosome:CEL140:II:10778335:10783199:-1 gene:T19E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10778341-10778660(-) 100.0 100.0
Public Domain and Genome References
Ensembl T19E10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54311 Hypothetical protein T19E10.1b [Caenorhabditis elegans] ref|NP_496318.1| T19E10.1b [Caenorhabditis elegans] 0.0
blast CAA86788 Hypothetical protein T19E10.1a [Caenorhabditis elegans] ref|NP_496319.1| T19E10.1a [Caenorhabditis elegans] 0.0
blast CAE59604 Hypothetical protein CBG03012 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001357 EMBL-EBI BRCT 2.6E-4
Pfam IPR001357 EMBL-EBI BRCT 1.7E-7
Pfam IPR000219 EMBL-EBI DH domain 6.7E-18
Sequence
Target Sequence 
>C. ELEGANS:194190_X_AT
caaccgaaactaccgtaatcaccatccacaactacgaccagatcctttgtatcatactga
tttaccatttaccacaggtgtatttttccccccaaatcgtcattatcatcttcctgtccc
cgaggcttgtgtgaccattgctccttgacttttattatttccccgaaatcacttgtatgc
cattcttatccgatacccctttccccttttattctcaccattcatttgaatggtcattcc
cccacagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCGAAACTACCGTAATCACCAT 574 145 27 Antisense
CGTAATCACCATCCACAACTACGAC 519 245 40 Antisense
CGACCAGATCCTTTGTATCATACTG 488 251 61 Antisense
ATCATACTGATTTACCATTTACCAC 76 31 77 Antisense
AAATCGTCATTATCATCTTCCTGTC 94 119 120 Antisense
CCCGAGGCTTGTGTGACCATTGCTC 231 261 145 Antisense
ACCATTGCTCCTTGACTTTTATTAT 586 85 160 Antisense
TTTCCCCGAAATCACTTGTATGCCA 436 669 184 Antisense
TGTATGCCATTCTTATCCGATACCC 71 561 200 Antisense
CTTTTATTCTCACCATTCATTTGAA 529 221 232 Antisense
TTTGAATGGTCATTCCCCCACAGTA 459 667 251 Antisense
Sequence Source Affymetrix Proprietary Database