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[194186_x_at]

Description CEK082GZR_rc /REP_DB=TREMBL Accession /GB=D71858 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk82g12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 09      6grp_total > 42      4grp_total > 24      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13842
1 2 3 4 range
A 23954.3
(-3)
P 		32822.4
(2)
P 		32941.3
(2)
P 		34647
(3)
P 		10693
B 26445.9
(-3)
P 		28488.7
(-0.8)
P 		31893.6
(3)
P 		31800.6
(2.9)
P 		5448
C 23976.7
(-3)
P 		26652.6
(-1.8)
P 		24756.1
(-2.7)
P 		37796.2
(3)
P 		13820
avr 24792.3
(-3) 		29321.2
(-0.3) 		29863.7
(0.1) 		34747.9
(3) 		9956

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11709
1 2 3 4 5 6 range
A 25862.7
(1.2)
P 		22108.5
(-1.2)
P 		28627.7
(3)
P 		23667.9
(-0.2)
P 		19312.1
(-3)
P 		21513.7
(-1.6)
P 		9316
B 20552.5
(0.3)
P 		21116.9
(0.8)
P 		23582.8
(3)
P 		20307.3
(0.1)
P 		18045.7
(-2)
P 		16918.9
(-3)
P 		6664
C 20795.2
(-1.4)
P 		21836.4
(-0.2)
P 		24652.5
(3)
P 		22153.3
(0.2)
P 		22060.2
(0)
P 		19389
(-3)
P 		5264
avr 22403.5
(-0) 		21687.3
(-0.7) 		25621
(3) 		22042.8
(-0.4) 		19806
(-2.5) 		19273.9
(-3) 		6347
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3650
1 2 3 4 range
A 8721.8
(3)
P 		7124.8
(0.4)
P 		8611.5
(2.8)
P 		5071.6
(-3)
P 		3650
B 8433.4
(3)
P 		7036
(-2.1)
P 		7390.5
(-0.8)
P 		6776.7
(-3)
P 		1657
C 7937
(1.2)
P 		7662.8
(0.4)
P 		8628.3
(3)
P 		6373
(-3)
P 		2255
avr 8364.1
(3) 		7274.5
(0.1) 		8210.1
(2.6) 		6073.8
(-3) 		2290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3408
1 2 3 4 5 6 range
A 4767.6
(-3)
P 		7862.9
(3)
P 		6234.5
(-0.2)
P 		6002.7
(-0.6)
P 		5827.6
(-0.9)
P 		5237.9
(-2.1)
P 		3095
B 7151.3
(2.4)
P 		7028.9
(2.1)
P 		5726.6
(-1.9)
P 		5378.7
(-3)
P 		7331.7
(3)
P 		6309
(-0.1)
P 		1953
C 7707.9
(3)
P 		6662.9
(1.1)
P 		6274.5
(0.4)
P 		4455
(-3)
P 		7138.4
(1.9)
P 		6490.6
(0.8)
P 		3253
avr 6542.3
(1) 		7184.9
(3) 		6078.5
(-0.5) 		5278.8
(-3) 		6765.9
(1.7) 		6012.5
(-0.7) 		1906
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194186_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20631
Sequence Type Exemplar sequence
Representative Public ID CEK082GZR NCBI
Target Description CEK082GZR_rc /REP_DB=TREMBL Accession /GB=D71858 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk82g12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063423 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-26) (rpl-26) mRNA, complete cds. 11/11 A 
F28C6.7b ENSEMBL cdna:known chromosome:CEL140:II:8602709:8603486:1 gene:F28C6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063422 7/11 Cross Hyb Matching Probes A 
NM_182165 8/11 Cross Hyb Matching Probes A 
SNAP00000038094 7/11 Cross Hyb Matching Probes None
GENEFINDER00000038104 7/11 Cross Hyb Matching Probes None
F28C6.7a.2 7/11 Cross Hyb Matching Probes None
F28C6.7a.1 7/11 Cross Hyb Matching Probes None
F28C6.7c 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174379 3 1 NM_063423 194186_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8603059-8603478(+) 100.0 100.0
Public Domain and Genome References
Ensembl F28C6.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92678 Hypothetical protein F28C6.7b [Caenorhabditis elegans] ref|NP_495824.1| Ribosomal Protein, Large subunit family member (rpl-26) [Caenorhabditis elegans] 1.0E-55
blast CAD59149 Hypothetical protein F28C6.7c [Caenorhabditis elegans] ref|NP_871965.1| Ribosomal Protein, Large subunit family member (rpl-26) [Caenorhabditis elegans] 1.0E-54
blast CAA92674 Hypothetical protein F28C6.7a [Caenorhabditis elegans] ref|NP_495823.1| Ribosomal Protein, Large subunit family member (rpl-26) [Caenorhabditis elegans] sp|Q19869|RL26_CAEEL 60S ribosomal protein L26 5.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR005824 EMBL-EBI KOW 3.5E-9
Sequence
Target Sequence 
>C. ELEGANS:194186_X_AT
aacactggacgtgtcctcagatgctaccgtaagaagttcgttatccacatcgacaagatc
acccgcgagaaggctaacggatccactgtgcacatcggaatccacccttcgaaggtgagg
tttgtataaactagttccggtgcacatcgactcatcacaactgtcaggtcgctatcacca
agctgaagctcgataaggatcgtcgtgccctcgttgagcgcaaggctgccggacgttccc
gcgtcactggaatcctcaaggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACTGGACGTGTCCTCAGATGCT 153 137 30 Antisense
TATCCACATCGACAAGATCACCCGC 677 657 71 Antisense
GAGAAGGCTAACGGATCCACTGTGC 352 391 96 Antisense
TCCACTGTGCACATCGGAATCCACC 673 587 111 Antisense
GGAATCCACCCTTCGAAGGTGAGGT 104 531 126 Antisense
TAAACTAGTTCCGGTGCACATCGAC 151 641 156 Antisense
GCACATCGACTCATCACAACTGTCA 393 317 171 Antisense
TCACAACTGTCAGGTCGCTATCACC 208 629 184 Antisense
GTCGCTATCACCAAGCTGAAGCTCG 377 475 197 Antisense
CTCGATAAGGATCGTCGTGCCCTCG 605 227 218 Antisense
CCGCGTCACTGGAATCCTCAAGGGA 14 263 268 Antisense
Sequence Source Affymetrix Proprietary Database