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[194185_x_at]

Description AU113309_rc /REP_DB=TREMBL Accession /GB=AU113309 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk705g6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 10      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 37      6grp_total > 31      4grp_total > 59      6grp_highest_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2477
1 2 3 4 range
A 5321.8
(1.8)
P 		5178.5
(1.3)
P 		5723.1
(3)
P 		3771.7
(-3)
P 		1951
B 4560.2
(1.3)
P 		5095.9
(3)
P 		4961.5
(2.6)
P 		3246.3
(-3)
P 		1850
C 4718.9
(0.7)
P 		5512.4
(3)
P 		5380.3
(2.6)
P 		3398.9
(-3)
P 		2114
avr 4867
(1.4) 		5262.3
(2.7) 		5355
(3) 		3472.3
(-3) 		1883

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2534
1 2 3 4 5 6 range
A 5766.2
(2.4)
P 		5092.8
(0.5)
P 		5991.2
(3)
P 		5170.6
(0.7)
P 		4415.4
(-1.4)
P 		3853
(-3)
P 		2138
B 5044.4
(1)
P 		5278.4
(1.9)
P 		4183.9
(-2)
P 		5257.1
(1.8)
P 		5588.4
(3)
P 		3914.6
(-3)
P 		1674
C 4824.5
(0.6)
P 		5506.8
(2.3)
P 		5688.8
(2.8)
P 		5767
(3)
P 		3971.6
(-1.7)
P 		3457.2
(-3)
P 		2310
avr 5211.7
(2.3) 		5292.7
(2.6) 		5288
(2.6) 		5398.2
(3) 		4658.5
(0.3) 		3741.6
(-3) 		1657
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1386
1 2 3 4 range
A 1937.7
(3)
P 		1124.1
(-0.5)
P 		1496.1
(1.1)
P 		552.1
(-3)
P 		1386
B 1454.2
(3)
P 		1258.6
(1.5)
P 		1149.7
(0.6)
P 		691.8
(-3)
P 		762
C 1562.1
(1.6)
P 		1584.9
(1.7)
P 		1875.2
(3)
P 		573.1
(-3)
P 		1302
avr 1651.3
(3) 		1322.5
(1.1) 		1507
(2.2) 		605.7
(-3) 		1046

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1332
1 2 3 4 5 6 range
A 1063
(-2.1)
P 		1811.3
(3)
P 		1304.8
(-0.5)
P 		1311.4
(-0.4)
P 		1332.4
(-0.3)
P 		938.1
(-3)
P 		873
B 1755.2
(0.5)
P 		1756.9
(0.5)
P 		1016
(-3)
P 		1392.4
(-1.2)
P 		2270.5
(3)
P 		1459.7
(-0.9)
P 		1255
C 1788.3
(3)
P 		1680.3
(2)
P 		1447.9
(-0.2)
P 		1159.7
(-3)
P 		1285.1
(-1.8)
P 		1157.3
(-3)
P 		631
avr 1535.5
(0.7) 		1749.5
(3) 		1256.2
(-2.2) 		1287.8
(-1.9) 		1629.3
(1.7) 		1185
(-3) 		565
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194185_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20687
Sequence Type Exemplar sequence
Representative Public ID AU113309 NCBI
Target Description AU113309_rc /REP_DB=TREMBL Accession /GB=AU113309 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk705g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171002(9), NM_171001(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171002 NCBI Caenorhabditis elegans C25H3.9b (C25H3.9) mRNA, complete cds. 9/11 None
NM_171001 NCBI Caenorhabditis elegans C25H3.9a (C25H3.9) mRNA, complete cds. 11/11 None
C25H3.9b.1 ENSEMBL cdna:known chromosome:CEL140:II:5690102:5691283:-1 gene:C25H3.9 9/11 None
C25H3.9b.2 ENSEMBL cdna:known chromosome:CEL140:II:5690102:5691283:-1 gene:C25H3.9 11/11 None
C25H3.9a.1 ENSEMBL cdna:known chromosome:CEL140:II:5690115:5691321:-1 gene:C25H3.9 11/11 None
C25H3.9a.3 ENSEMBL cdna:known chromosome:CEL140:II:5690115:5691323:-1 gene:C25H3.9 11/11 None
C25H3.9a.2 ENSEMBL cdna:known chromosome:CEL140:II:5690123:5691317:-1 gene:C25H3.9 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016809 4/11 Cross Hyb Matching Probes None
GENEFINDER00000016825 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5690174-5690703(-) 100.0 100.0
Public Domain and Genome References
Ensembl C25H3.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31457 Hypothetical protein C25H3.9a [Caenorhabditis elegans] ref|NP_741000.1| C25H3.9a [Caenorhabditis elegans] 1.0E-102
blast T15628 hypothetical protein C25H3.9 - Caenorhabditis elegans 1.0E-102
blast CAE59171 Hypothetical protein CBG02478 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741001.1 1 50-72
NP_741000.1 1 50-72
C25H3.9b.1 1 50-72
C25H3.9b.2 1 50-72
C25H3.9a.1 1 50-72
C25H3.9a.3 1 50-72
C25H3.9a.2 1 50-72
Sequence
Target Sequence 
>C. ELEGANS:194185_X_AT
atggagctatcagccagtgtcttccacctgggtcgattatggaagatggcatgctctccg
catgagagatcaatacgagcaacacggacactatgctcagtaattcttcatcaacgcctt
cccgcaatggttgtttgaatcgaattggcagtttctacgtgtcagcgcatccgcccgtct
tccttatccatcctttcgaatagttccttcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAGCTATCAGCCAGTGTCTTCC 178 53 17 Antisense
TGTCTTCCACCTGGGTCGATTATGG 224 559 34 Antisense
TATGGAAGATGGCATGCTCTCCGCA 412 655 54 Antisense
TCAATACGAGCAACACGGACACTAT 184 633 86 Antisense
CGGACACTATGCTCAGTAATTCTTC 503 241 101 Antisense
TGCTCAGTAATTCTTCATCAACGCC 44 579 110 Antisense
GCCTTCCCGCAATGGTTGTTTGAAT 371 265 132 Antisense
GGTTGTTTGAATCGAATTGGCAGTT 67 509 145 Antisense
TTGGCAGTTTCTACGTGTCAGCGCA 426 707 161 Antisense
TCCTTATCCATCCTTTCGAATAGTT 574 589 197 Antisense
CATCCTTTCGAATAGTTCCTTCTTT 243 211 205 Antisense
Sequence Source Affymetrix Proprietary Database