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[194181_x_at]

Description CEK099B4R_rc /REP_DB=TREMBL Accession /GB=D66367 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk99b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 50      6grp_total > 02      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 594.3
(3)
P 		440.7
(-3)
P 		528.8
(0.4)
P 		487.3
(-1.2)
P 		154
B 581
(3)
P 		377.9
(-3)
P 		408.9
(-2.1)
P 		532.1
(1.6)
P 		203
C 540
(3)
P 		473.7
(-0.4)
P 		422.1
(-3)
P 		513.9
(1.7)
P 		118
avr 571.8
(3) 		430.8
(-3) 		453.3
(-2) 		511.1
(0.4) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 616.7
(2.3)
P 		585.7
(1.5)
P 		423.9
(-2.7)
P 		413.3
(-3)
P 		645.5
(3)
P 		480.9
(-1.3)
P 		232
B 645
(2.6)
P 		669.3
(3)
P 		294.8
(-3)
P 		550.8
(1.1)
P 		492.8
(0.2)
P 		537.8
(0.9)
P 		375
C 523.3
(0.6)
P 		640.6
(3)
P 		472
(-0.4)
P 		400.9
(-1.8)
P 		510.1
(0.4)
P 		342.6
(-3)
P 		298
avr 595
(2.1) 		631.9
(3) 		396.9
(-3) 		455
(-1.5) 		549.5
(0.9) 		453.8
(-1.5) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 216.4
(3)
P 		95.7
(-2)
P 		138.2
(-0.2)
P 		71.3
(-3)
P 		145
B 185.3
(3)
P 		93.3
(-3)
P 		94.8
(-2.9)
P 		113.4
(-1.7)
P 		92
C 178.8
(3)
P 		136.2
(0.2)
P 		147.1
(0.9)
P 		86.6
(-3)
P 		92
avr 193.5
(3) 		108.4
(-2) 		126.7
(-0.9) 		90.4
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 113.7
(-1.9)
P 		208.3
(3)
P 		92.3
(-3)
P 		104.8
(-2.4)
P 		194.8
(2.3)
P 		117.1
(-1.7)
P 		116
B 224.4
(3)
P 		222.8
(2.9)
P 		71.6
(-3)
P 		145.9
(-0.1)
P 		200.2
(2)
P 		200.5
(2.1)
P 		153
C 194
(2.9)
P 		195.5
(3)
P 		120.1
(-0.9)
P 		80.6
(-3)
P 		165.1
(1.4)
P 		114.7
(-1.2)
P 		115
avr 177.4
(1.3) 		208.9
(3) 		94.7
(-3) 		110.4
(-2.2) 		186.7
(1.8) 		144.1
(-0.4) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194181_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22463
Sequence Type Exemplar sequence
Representative Public ID CEK099B4R NCBI
Target Description CEK099B4R_rc /REP_DB=TREMBL Accession /GB=D66367 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk99b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R11B5.1 ENSEMBL cdna:known chromosome:CEL140:X:2525207:2532430:-1 gene:R11B5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2525216-2525534(-) 100.0 100.0
Public Domain and Genome References
Ensembl R11B5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83513 Hypothetical protein R11B5.1 [Caenorhabditis elegans] ref|NP_508458.1| R11B5.1 [Caenorhabditis elegans] 0.0
blast CAE58864 Hypothetical protein CBG02093 [Caenorhabditis briggsae] 0.0
blast XP_585982 PREDICTED: similar to TBC1 domain family member 12 [Bos taurus] 2.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 2.4E-8
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 2.5E-11
Sequence
Target Sequence 
>C. ELEGANS:194181_X_AT
gtgcataatacacgcattttttttgttaaaccagattcctatccaatccccgccacattc
aatttgctccgtttcattgtgccttacaacgaagatttttccctctctctctcttaaaac
aagacaactccttctctcatttttgccatcattttacattttcttatcaaaaatcccgaa
tcgtaccgtaccgtttgaaaaacaagcgttcccacatgacacgttttatattgattcaac
tgttattcggtggttatccaattatgaagcaacgcagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCATAATACACGCATTTTTTTTG 98 481 22 Antisense
TTAAACCAGATTCCTATCCAATCCC 48 683 47 Antisense
CCACATTCAATTTGCTCCGTTTCAT 614 275 74 Antisense
CTCCGTTTCATTGTGCCTTACAACG 636 233 88 Antisense
TACAACGAAGATTTTTCCCTCTCTC 209 643 106 Antisense
TCCCTCTCTCTCTCTTAAAACAAGA 170 597 121 Antisense
AAACAAGACAACTCCTTCTCTCATT 400 129 138 Antisense
TTCTCTCATTTTTGCCATCATTTTA 241 693 153 Antisense
GCCATCATTTTACATTTTCTTATCA 119 281 166 Antisense
ACAAGCGTTCCCACATGACACGTTT 100 111 223 Antisense
TATCCAATTATGAAGCAACGCAGTC 408 657 276 Antisense
Sequence Source Affymetrix Proprietary Database