[Home] | [Total List]

[194179_x_at] phosphate permease

Description CEK001C6R_rc /REP_DB=TREMBL Accession /GB=D32660 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1c6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 67      6grp_total > 16      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1052
1 2 3 4 range
A 2116.3
(3)
P 		1240.5
(-2.7)
P 		1400.3
(-1.7)
P 		1196.4
(-3)
P 		920
B 2114.5
(3)
P 		1514.1
(-0.9)
P 		1188.9
(-3)
P 		1346.8
(-2)
P 		926
C 1912.4
(3)
P 		1457.4
(-0.2)
P 		1341.6
(-1)
P 		1064.6
(-3)
P 		848
avr 2047.7
(3) 		1404
(-1.6) 		1310.3
(-2.2) 		1202.6
(-3) 		845

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1184
1 2 3 4 5 6 range
A 2185.9
(3)
P 		2101.8
(2.2)
P 		1522
(-3)
P 		1607.8
(-2.2)
P 		1657.1
(-1.8)
P 		2153.8
(2.7)
P 		664
B 2463.5
(3)
P 		2405.5
(2.6)
P 		1687.8
(-2)
P 		1806.5
(-1.2)
P 		1524.5
(-3)
P 		1696
(-1.9)
P 		939
C 2705.9
(3)
P 		1781.2
(-1.9)
P 		1807.9
(-1.7)
P 		1778.5
(-1.9)
P 		1896.8
(-1.3)
P 		1570.3
(-3)
P 		1136
avr 2451.8
(3) 		2096.2
(0.3) 		1672.6
(-3) 		1730.9
(-2.6) 		1692.8
(-2.8) 		1806.7
(-2) 		779
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 596
1 2 3 4 range
A 770.6
(3)
P 		269.3
(-2.1)
P 		366.1
(-1.1)
P 		175.1
(-3)
P 		596
B 674.3
(3)
P 		374
(-1.5)
P 		275.5
(-3)
P 		287
(-2.8)
P 		399
C 633.1
(3)
P 		419
(0.2)
P 		467.6
(0.8)
P 		179.5
(-3)
P 		454
avr 692.7
(3) 		354.1
(-1.2) 		369.7
(-1) 		213.9
(-3) 		479

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 672
1 2 3 4 5 6 range
A 403
(-2)
P 		747.5
(3)
P 		331.5
(-3)
P 		407.8
(-1.9)
P 		500.1
(-0.6)
P 		524.4
(-0.2)
P 		416
B 857.2
(3)
P 		800.7
(2.2)
P 		409.8
(-3)
P 		478.5
(-2.1)
P 		619.4
(-0.2)
P 		632.4
(-0)
P 		447
C 1003
(3)
P 		543.5
(-1.3)
P 		460.1
(-2)
P 		357.7
(-3)
P 		613.8
(-0.6)
P 		525.7
(-1.4)
P 		645
avr 754.4
(3) 		697.2
(2) 		400.5
(-3) 		414.7
(-2.8) 		577.8
(0) 		560.8
(-0.3) 		354
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194179_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21335
Sequence Type Exemplar sequence
Representative Public ID CEK001C6R NCBI
Target Description CEK001C6R_rc /REP_DB=TREMBL Accession /GB=D32660 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1c6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068779 NCBI Caenorhabditis elegans C48A7.2 (C48A7.2) mRNA, complete cds. 11/11 None
C48A7.2 ENSEMBL cdna:known chromosome:CEL140:IV:7393205:7397542:1 gene:C48A7.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7397160-7397517(+) 100.0 100.0
Public Domain and Genome References
Gene Title phosphate permease
Ensembl C48A7.2
Entrez Gene 177512 Entrez gene
SwissProt Q18697 EMBL-EBI
WormBase CE20573 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6817 phosphate transport inferred from electronic annotation QuickGO AmiGO
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
30125 clathrin vesicle coat inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5315 inorganic phosphate transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03157 Hypothetical protein C48A7.2 [Caenorhabditis elegans] ref|NP_501180.1| C48A7.2 [Caenorhabditis elegans] 0.0
blast CAE61873 Hypothetical protein CBG05853 [Caenorhabditis briggsae] 0.0
blast NP_504823 F09G2.3 [Caenorhabditis elegans] gb|AAB71321.2| Hypothetical protein F09G2.3 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR001204 EMBL-EBI Phosphate transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501180.1 9 7-25,40-62,94-116,126-148,155-174,189-211,224-246,401-423,488-510
C48A7.2 9 7-25,40-62,94-116,126-148,155-174,189-211,224-246,401-423,488-510
Sequence
Target Sequence 
>C. ELEGANS:194179_X_AT
ttattaacctctcttcagtttctaaagccgtacctgagaacgtctgaagctcatcttttg
cagaaagcaactttcgtttgtttctctcttctcattcctttttatcagtttttattttct
tttaaaacacacaagattgtctcccccacattcattgatttctcccctcccaaaacagaa
tctttaccgactccgtgaactttttgttcgcccctttccccctcttacaaaaatcttcac
ttcggcttgtttaggaaagtgattcttgaaattttcagaggatttcagaattatctttct
caaaactacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTAACCTCTCTTCAGTTTCTAA 617 673 13 Antisense
CTCTTCAGTTTCTAAAGCCGTACCT 408 219 23 Antisense
CTAAAGCCGTACCTGAGAACGTCTG 574 225 34 Antisense
GAACGTCTGAAGCTCATCTTTTGCA 120 349 50 Antisense
AAGCAACTTTCGTTTGTTTCTCTCT 31 153 77 Antisense
CTCTTCTCATTCCTTTTTATCAGTT 144 231 98 Antisense
AAAACACACAAGATTGTCTCCCCCA 100 131 136 Antisense
ACAGAATCTTTACCGACTCCGTGAA 28 103 187 Antisense
CTTACAAAAATCTTCACTTCGGCTT 487 213 236 Antisense
AAAATCTTCACTTCGGCTTGTTTAG 465 131 242 Antisense
GAATTATCTTTCTCAAAACTACGCC 611 321 300 Antisense
Sequence Source Affymetrix Proprietary Database