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[194178_x_at]

Description AV183328_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F41G4.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV183328 /WB_GENE_ID=F41G4.6 /WP=CE04551 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk649g3 : 3prime end, single read.
Cluster 6grp_total > 90      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 12.8
(-2.8)
A 		40.7
(3)
A 		30.4
(0.9)
A 		11.6
(-3)
A 		29
B 6.8
(-3)
A 		12.5
(1.1)
A 		15.1
(3)
A 		14.7
(2.7)
A 		8
C 24
(0.6)
A 		27.1
(2.3)
A 		28.3
(3)
A 		17.7
(-3)
A 		11
avr 14.5
(-3) 		26.8
(3) 		24.6
(1.9) 		14.7
(-2.9) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 31.4
(3)
A 		7.7
(-3)
A 		8.8
(-2.7)
A 		18.8
(-0.2)
A 		24.7
(1.3)
A 		13.3
(-1.6)
A 		24
B 15.1
(-0.8)
A 		11.5
(-1.6)
A 		5.2
(-3)
A 		20.3
(0.4)
A 		11.3
(-1.6)
A 		31.7
(3)
A 		27
C 7.1
(-2.8)
A 		13.2
(-2.2)
A 		11.7
(-2.3)
A 		65.2
(3)
A 		15.6
(-2)
A 		5.1
(-3)
A 		60
avr 17.9
(-0.9) 		10.8
(-2.5) 		8.6
(-3) 		34.8
(3) 		17.2
(-1) 		16.7
(-1.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.6
(-0.5)
A 		8.8
(3)
A 		7.9
(2.2)
A 		1.7
(-3)
A 		7
B 2.2
(-3)
A 		3.1
(1.2)
A 		3.5
(3)
A 		3.1
(1.2)
A 		1
C 8
(1.3)
A 		7.8
(1.2)
A 		9.9
(3)
A 		3
(-3)
A 		7
avr 4.9
(0.1) 		6.6
(2.3) 		7.1
(3) 		2.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.8
(1.2)
A 		2.7
(-2.1)
A 		1.9
(-3)
A 		4.8
(0.1)
A 		7.5
(3)
A 		3.2
(-1.6)
A 		6
B 5.3
(-0.7)
A 		3.8
(-1.6)
A 		1.3
(-3)
A 		5.4
(-0.7)
A 		4.6
(-1.1)
A 		11.8
(3)
A 		11
C 2.6
(-2.5)
A 		4
(-1.8)
A 		3
(-2.3)
A 		13.1
(3)
A 		5
(-1.3)
A 		1.7
(-3)
A 		11
avr 4.6
(-0.4) 		3.5
(-1.5) 		2.1
(-3) 		7.8
(3) 		5.7
(0.8) 		5.6
(0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194178_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26139
Sequence Type Exemplar sequence
Representative Public ID AV183328 NCBI
Target Description AV183328_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F41G4.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV183328 /WB_GENE_ID=F41G4.6 /WP=CE04551 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk649g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078318 NCBI Caenorhabditis elegans F41G4.7 (F41G4.7) mRNA, complete cds. 11/11 A 
SNAP00000036411 ENSEMBL cdna:SNAP chromosome:CEL140:X:16833595:16834704:-1 9/11 None
GENEFINDER00000036422 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16833595:16834704:-1 9/11 None
F41G4.7 ENSEMBL cdna:known chromosome:CEL140:X:16833501:16836308:-1 gene:F41G4.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075514 3/11 Cross Hyb Matching Probes A 
SNAP00000015578 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015584 2/11 Cross Hyb Matching Probes None
ZC15.3 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20301669-20302969(+) 83.38 96.5
chrX:16833511-16834705(-) 86.7 100.0
Public Domain and Genome References
Gene Title
Ensembl F41G4.7
Entrez Gene 181732 Entrez gene
SwissProt Q8WTN3 EMBL-EBI
WormBase CE29799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85487 Hypothetical protein F41G4.7 [Caenorhabditis elegans] ref|NP_510719.2| F41G4.7 [Caenorhabditis elegans] 0.0
blast CAB07711 Hypothetical protein ZC15.3 [Caenorhabditis elegans] ref|NP_507915.1| ZC15.3 [Caenorhabditis elegans] 1.0E-168
blast AAK85487 Hypothetical protein F41G4.7 [Caenorhabditis elegans] ref|NP_510719.2| F41G4.7 [Caenorhabditis elegans] 1.0E-126
blast CAB07711 Hypothetical protein ZC15.3 [Caenorhabditis elegans] ref|NP_507915.1| ZC15.3 [Caenorhabditis elegans] 1.0E-122
blast CAB04165 Hypothetical protein F21D9.8 [Caenorhabditis elegans] ref|NP_507749.1| F21D9.8 [Caenorhabditis elegans] 7.0E-14
Sequence
Target Sequence 
>C. ELEGANS:194178_X_AT
tttacgacatcgcccaggtcgcaatcaacatgaagacgatgagcgagaccatcgccaaaa
tcgacgctcgtgaggaacaggctgcccaaaagcaagccgagcgctacaccccgcaaggag
gacagggatcattggagccagtgctgaagtgcccactgtgcaaacgtcatcacgctccgg
aaaactgcaccatcatcagaaatggactcgatcgtcgcgaggaagccgaaaagatcaaaa
tgtgcattcaatgcctcgaagtcggcgtgacaaatgacgattgggtccacgaaggctgcc
caaaggagaaggagcagtgcaccagatgcaccaaatacatgaagccaggagaaatcgccc
agactcaccacaacgccacattctgcctaatgctcacctcgaagcagtacaagctcgagc
gcaagggatccccgtccgatcgtgattactcgccaaaaggccgcagaggaccgattcgct
cccgccacaaccgctatggaggccgaggacgccgcagagacagctaccattaagcttctg
catactcgctgcccctcctcattatcattcccgctgttggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACGACATCGCCCAGGTCGCAAT 618 663 540 Antisense
GAGACCATCGCCAAAATCGACGCTC 330 395 584 Antisense
TTGGAGCCAGTGCTGAAGTGCCCAC 189 709 671 Antisense
CCCACTGTGCAAACGTCATCACGCT 682 255 691 Antisense
TCATCACGCTCCGGAAAACTGCACC 355 621 706 Antisense
GAAGCCAGGAGAAATCGCCCAGACT 463 345 880 Antisense
GTCCGATCGTGATTACTCGCCAAAA 139 477 973 Antisense
AAAAGGCCGCAGAGGACCGATTCGC 461 127 994 Antisense
CGCCACAACCGCTATGGAGGCCGAG 667 257 1022 Antisense
CATTAAGCTTCTGCATACTCGCTGC 54 215 1067 Antisense
CTCATTATCATTCCCGCTGTTGGAT 497 229 1097 Antisense
Sequence Source Affymetrix Proprietary Database