[Home] | [Total List]

[194177_x_at]

Description AV193037 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K10B3.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV193037 /WB_GENE_ID=K10B3.8 /WP=CE07371 /CHR=X /FEA=Genomic Cluster /GEN=gpd-2 /DEF=Caenorhabditis elegans cDNA clone:yk612f2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 09      6grp_total > 50      4grp_total > 59      6grp_highest_sub > 04      6grp_cgc > 93      6grp_high1_sub > 03_04      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8918
1 2 3 4 range
A 20319.3
(-2)
P 		24061.2
(0.8)
P 		27024.9
(3)
P 		19044.2
(-3)
P 		7981
B 24455.1
(3)
P 		21858.5
(0.5)
P 		20210.5
(-1)
P 		18107.1
(-3)
P 		6348
C 19856
(-0.5)
P 		21493
(3)
P 		19596.3
(-1)
P 		18659.8
(-3)
P 		2833
avr 21543.5
(1.6) 		22470.9
(3) 		22277.2
(2.7) 		18603.7
(-3) 		3867

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11596
1 2 3 4 5 6 range
A 29575.7
(3)
P 		22523.6
(-2.3)
P 		27965.7
(1.8)
P 		26394.4
(0.6)
P 		22621.5
(-2.2)
P 		21575.1
(-3)
P 		8001
B 21253.3
(-0.7)
P 		23851.2
(1.5)
P 		21888.7
(-0.1)
P 		25715.3
(3)
P 		18403.5
(-3)
P 		21036.6
(-0.8)
P 		7312
C 19290
(-2.2)
P 		22936.1
(-0)
P 		27707.6
(2.8)
P 		28024.1
(3)
P 		19955.2
(-1.8)
P 		17980.2
(-3)
P 		10044
avr 23373
(-0.1) 		23103.6
(-0.3) 		25854
(2.2) 		26711.3
(3) 		20326.7
(-2.9) 		20197.3
(-3) 		6514
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5011
1 2 3 4 range
A 7398.3
(3)
P 		5223
(0.2)
P 		7064.8
(2.6)
P 		2787.7
(-3)
P 		4611
B 7798.5
(3)
P 		5398.6
(-0.7)
P 		4683.2
(-1.7)
P 		3858.6
(-3)
P 		3940
C 6572.9
(2.6)
P 		6179.4
(1.9)
P 		6829.9
(3)
P 		3146.3
(-3)
P 		3684
avr 7256.6
(3) 		5600.3
(0.5) 		6192.6
(1.4) 		3264.2
(-3) 		3992

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2758
1 2 3 4 5 6 range
A 5452
(-2.6)
P 		8010.5
(3)
P 		6090.3
(-1.2)
P 		6694.2
(0.1)
P 		6826.2
(0.4)
P 		5252.8
(-3)
P 		2758
B 7395.1
(1.8)
P 		7939.1
(3)
P 		5315.2
(-3)
P 		6811.1
(0.4)
P 		7477.1
(1.9)
P 		7844.4
(2.8)
P 		2624
C 7150
(3)
P 		6998.5
(2.4)
P 		7052.1
(2.6)
P 		5635.7
(-3)
P 		6457.2
(0.3)
P 		6019
(-1.5)
P 		1514
avr 6665.7
(-0.9) 		7649.4
(3) 		6152.5
(-3) 		6380.3
(-2.1) 		6920.2
(0.1) 		6372.1
(-2.1) 		1497
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194177_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26243
Sequence Type Exemplar sequence
Representative Public ID AV193037 NCBI
Target Description AV193037 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K10B3.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV193037 /WB_GENE_ID=K10B3.8 /WP=CE07371 /CHR=X /FEA=Genomic Cluster /GEN=gpd-2 /DEF=Caenorhabditis elegans cDNA clone:yk612f2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076135(11), NM_076134(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076135 NCBI Caenorhabditis elegans Mitochondrial ATPase Inhibitor family member (mai-1) (mai-1) mRNA, complete cds. 11/11 None
NM_076134 NCBI Caenorhabditis elegans GPD (glyceraldehyde 3-phosphate dehydrogenase) family member (gpd-2) (gpd-2) mRNA, complete cds. 11/11 A 
K10B3.8.3 ENSEMBL cdna:known chromosome:CEL140:X:3113429:3114724:-1 gene:K10B3.8 11/11 None
K10B3.8.2 ENSEMBL cdna:known chromosome:CEL140:X:3113429:3114680:-1 gene:K10B3.8 11/11 None
K10B3.8.1 ENSEMBL cdna:known chromosome:CEL140:X:3113429:3114682:-1 gene:K10B3.8 11/11 None
K10B3.9.1 ENSEMBL cdna:known chromosome:CEL140:X:3113441:3115580:-1 gene:K10B3.9 11/11 A 
K10B3.9.3 ENSEMBL cdna:known chromosome:CEL140:X:3113441:3115569:-1 gene:K10B3.9 11/11 None
K10B3.9.2 ENSEMBL cdna:known chromosome:CEL140:X:3113441:3116582:-1 gene:K10B3.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076133 3/11 Cross Hyb Matching Probes A 
SNAP00000032571 3/11 Cross Hyb Matching Probes None
GENEFINDER00000032580 3/11 Cross Hyb Matching Probes None
SNAP00000032572 7/11 Cross Hyb Matching Probes None
GENEFINDER00000032583 7/11 Cross Hyb Matching Probes None
K10B3.7.1 3/11 Cross Hyb Matching Probes None
K10B3.7.2 3/11 Cross Hyb Matching Probes None
K10B3.7.3 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3113451-3114679(-) 100.0 100.0
chrX:3112227-3113306(-) 85.17 85.17
Public Domain and Genome References
Gene Title

Gene Symbol gpd-2
mai-1
Ensembl K10B3.8
K10B3.9
Entrez Gene 3565232 Entrez gene
3565504 Entrez gene
SwissProt P17329 EMBL-EBI
P37209 EMBL-EBI
WormBase CE07371 Wormbase
CE07372 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262939_S_AT glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, putative at
ATGENOME1:17396_AT glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, putative at
CANINE:1582358_S_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFA.16332.1.S1_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.12458.1.S1_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.12458.1.S1_X_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.13010.1.S1_X_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.15326.1.S1_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.15326.1.S1_X_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.22564.1.S1_S_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.23015.1.S1_X_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.26731.1.S1_X_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.30894.1.S1_X_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.5711.1.S1_X_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.8103.1.S1_AT glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1592653_S_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1604083_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFA.11828.1.A1_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1589421_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1591372_X_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1592208_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1592654_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1592992_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1593938_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1594672_S_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1594800_X_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1594845_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1596025_X_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1596915_S_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1595705_S_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1602343_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1593804_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1593805_S_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1593462_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1593463_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1595821_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1600008_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1583474_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1602951_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1593612_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1588798_S_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE:1599023_AT Glyceraldehyde-3-phosphate dehydrogenase cfa
DROSOPHILA_2:1640907_AT Glyceraldehyde 3 phosphate dehydrogenase 1 dm
DROSGENOME1:154244_AT Glyceraldehyde 3 phosphate dehydrogenase 1 dm
CHICKEN:GGA.1374.4.S1_A_AT glyceraldehyde-3-phosphate dehydrogenase gga
CHICKEN:GGA.1374.4.S1_X_AT glyceraldehyde-3-phosphate dehydrogenase gga
HG-U133A:212581_X_AT glyceraldehyde-3-phosphate dehydrogenase hs
HG-FOCUS:212581_X_AT glyceraldehyde-3-phosphate dehydrogenase hs
HG-U133_PLUS_2:212581_X_AT glyceraldehyde-3-phosphate dehydrogenase hs
HG-U133A_2:212581_X_AT glyceraldehyde-3-phosphate dehydrogenase hs
HG-U133_PLUS_2:217398_X_AT glyceraldehyde-3-phosphate dehydrogenase hs
HG-U133A_2:217398_X_AT glyceraldehyde-3-phosphate dehydrogenase hs
HG-U133A:217398_X_AT glyceraldehyde-3-phosphate dehydrogenase hs
HU35KSUBA:X01677_S_AT glyceraldehyde-3-phosphate dehydrogenase hs
HU35KSUBC:RC_C14088_F_AT glyceraldehyde-3-phosphate dehydrogenase hs
HUGENEFL:X01677_F_AT glyceraldehyde-3-phosphate dehydrogenase hs
U133_X3P:HS.169476.5.A1_3P_S_AT glyceraldehyde-3-phosphate dehydrogenase hs
U133_X3P:HS.169476.4.A1_3P_S_AT glyceraldehyde-3-phosphate dehydrogenase hs
U133_X3P:217398_3P_X_AT glyceraldehyde-3-phosphate dehydrogenase hs
HG-U133A_2:213453_X_AT glyceraldehyde-3-phosphate dehydrogenase hs
HG-U133_PLUS_2:213453_X_AT glyceraldehyde-3-phosphate dehydrogenase hs
HG-U133A:213453_X_AT glyceraldehyde-3-phosphate dehydrogenase hs
HG-U95AV2:35905_S_AT glyceraldehyde-3-phosphate dehydrogenase hs
HG-U95AV2:39482_AT Glyceraldehyde-3-phosphate dehydrogenase hs
HG-U95C:55942_AT Glyceraldehyde-3-phosphate dehydrogenase hs
HU35KSUBD:RC_AA419281_AT Glyceraldehyde-3-phosphate dehydrogenase hs
MOUSE430A_2:1447999_X_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOE430A:1447999_X_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOUSE430_2:1447999_X_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MU11KSUBB:MSA.677.0_F_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74AV2:162176_R_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74CV2:169710_I_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
RT-U34:M17701_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
RG-U34A:M17701_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
YEAST_2:1778260_AT Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6006 glucose metabolism inferred from electronic annotation QuickGO AmiGO
6096 glycolysis inferred from electronic annotation QuickGO AmiGO
45978 negative regulation of nucleoside metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5739 mitochondrion inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4365 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity inferred from electronic annotation QuickGO AmiGO
8943 glyceraldehyde-3-phosphate dehydrogenase activity inferred from electronic annotation QuickGO AmiGO
4857 enzyme inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53874 Gpd (glyceraldehyde 3-phosphate dehydrogenase) protein 2 [Caenorhabditis elegans] ref|NP_508535.1| GPD (glyceraldehyde 3-phosphate dehydrogenase) family member (gpd-2) [Caenorhabditis elegans] 0.0
blast AAB53869 Gpd (glyceraldehyde 3-phosphate dehydrogenase) protein 3 [Caenorhabditis elegans] emb|CAA33327.1| gpd-3 gene product [Caenorhabditis elegans] ref|NP_508534.3| GPD (glyceraldehyde 3-phosphate dehydrogenase) family member (gpd-3) [Caenorhabditis elegans] sp|P17330|G3P3_CAEEL Glyceraldehyde-3-phosphate dehydrogenase 3 (GAPDH-3) 0.0
blast CAA33326 gpd-2 gene product [Caenorhabditis elegans] sp|P17329|G3P2_CAEEL Glyceraldehyde-3-phosphate dehydrogenase 2 (GAPDH-2) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000173 EMBL-EBI Glyceraldehyde 3-phosphate dehydrogenase 1.3E-119
Pfam IPR000173 EMBL-EBI Glyceraldehyde 3-phosphate dehydrogenase 1.0E-126
Pfam IPR007648 EMBL-EBI Mitochondrial ATPase inhibitor, IATP 7.3E-34
Sequence
Target Sequence 
>C. ELEGANS:194177_X_AT
agggacttatgaccactgtccacgccgtcaccgccacccaaaagactgttgacggaccat
caggaaagctctggagagacggacgtggagctggacagaacatcatcccagcctctactg
gagccgctaaggctgttggaaaggttatcccagagctcaatggaaagctcaccggaatgg
ctttccgtgtcccaaccccagatgtgtctgttgttgatctcactgctcgtcttgagaagc
cagcttccctcgatgacatcaagaaagttatcaaggctgccgctgacggaccaatgaagg
gaattctcgcttacactgaggatcaagttgtctccaccgactttgtctccgataccaact
cttccatcttcgatgccggagcatccatctcactcaacccacacttcgtcaagctcgtct
cgtggtacgataacgagttcggatactccaacagagttgttgatctcatctcgtacatcg
ccaccaaggcctaagctgtctcatcctactttcacctagttaactgcttgtcttaaaatc
tatgcttctctttagtatctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGGACTTATGACCACTGTCCACGC 488 55 546 Antisense
CAGCCTCTACTGGAGCCGCTAAGGC 482 203 654 Antisense
GTGTCTGTTGTTGATCTCACTGCTC 367 487 749 Antisense
GTTATCAAGGCTGCCGCTGACGGAC 345 447 812 Antisense
TGAGGATCAAGTTGTCTCCACCGAC 56 565 862 Antisense
TCGTCAAGCTCGTCTCGTGGTACGA 518 601 951 Antisense
TTGTTGATCTCATCTCGTACATCGC 212 707 1002 Antisense
TCTCATCCTACTTTCACCTAGTTAA 687 611 1044 Antisense
TTCACCTAGTTAACTGCTTGTCTTA 550 687 1056 Antisense
GCTTGTCTTAAAATCTATGCTTCTC 407 307 1071 Antisense
ATCTATGCTTCTCTTTAGTATCTAA 51 33 1083 Antisense
Sequence Source Affymetrix Proprietary Database