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[194173_s_at]

Description C67069 /REP_DB=TREMBL Accession /GB=C67069 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk253b12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 93      6grp_total > 78      4grp_total > 12      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 331.6
(-1.2)
P 		309.4
(-1.8)
P 		260.9
(-3)
P 		498.2
(3)
P 		237
B 338.5
(-0)
P 		302.9
(-0.9)
P 		209.3
(-3)
P 		470.6
(3)
P 		261
C 338.5
(-0.9)
P 		249
(-3)
P 		258.6
(-2.8)
P 		505
(3)
P 		256
avr 336.2
(-0.7) 		287.1
(-1.9) 		242.9
(-3) 		491.3
(3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 460
1 2 3 4 5 6 range
A 332
(-2.1)
P 		288.9
(-3)
P 		341.7
(-1.9)
P 		336.8
(-2)
P 		403.2
(-0.5)
P 		567.7
(3)
P 		279
B 370.8
(-1.4)
P 		269.9
(-3)
P 		352.8
(-1.7)
P 		314.1
(-2.3)
P 		448.8
(-0.1)
P 		646.1
(3)
P 		376
C 321.8
(-3)
P 		322.8
(-3)
P 		358.7
(-2.5)
P 		342.4
(-2.7)
P 		418.4
(-1.6)
P 		729.9
(3)
P 		408
avr 341.5
(-2.2) 		293.9
(-3) 		351.1
(-2) 		331.1
(-2.4) 		423.5
(-0.8) 		647.9
(3) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 120.7
(3)
P 		67.2
(-3)
P 		68.2
(-2.9)
P 		72.9
(-2.4)
P 		54
B 107.9
(3)
P 		74.8
(-0.3)
P 		48.5
(-3)
P 		100.3
(2.2)
P 		59
C 112.1
(3)
P 		71.6
(-3)
P 		90.1
(-0.3)
P 		85.2
(-1)
P 		41
avr 113.6
(3) 		71.2
(-2.7) 		68.9
(-3) 		86.1
(-0.7) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 61.2
(-3)
P 		102.8
(0.2)
P 		74.4
(-2)
P 		85.4
(-1.1)
P 		121.7
(1.7)
P 		138.2
(3)
P 		77
B 129
(-1.3)
P 		89.8
(-2.7)
P 		85.7
(-2.9)
P 		83.2
(-3)
P 		182.3
(0.8)
P 		240.9
(3)
P 		158
C 119.3
(-1.3)
P 		98.5
(-2)
P 		91.3
(-2.2)
P 		68.9
(-3)
P 		135.4
(-0.7)
P 		244.4
(3)
P 		176
avr 103.2
(-1.9) 		97
(-2.2) 		83.8
(-2.8) 		79.2
(-3) 		146.5
(0.1) 		207.8
(3) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194173_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27621
Sequence Type Exemplar sequence
Representative Public ID C67069 NCBI
Target Description C67069 /REP_DB=TREMBL Accession /GB=C67069 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk253b12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066778 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-52) (lin-52) mRNA, complete cds. 11/11 A 
SNAP00000031479 ENSEMBL cdna:SNAP chromosome:CEL140:III:9824052:9824637:-1 11/11 None
GENEFINDER00000031483 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9824052:9827045:-1 11/11 None
ZK632.13 ENSEMBL cdna:known chromosome:CEL140:III:9823974:9824644:-1 gene:ZK632.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9823973-9824352(-) 64.3 64.3
Public Domain and Genome References
Gene Title
Gene Symbol lin-52
Ensembl ZK632.13
Entrez Gene 176393 Entrez gene
SwissProt Q10120 EMBL-EBI
WormBase CE01711 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80188 Hypothetical protein ZK632.13 [Caenorhabditis elegans] ref|NP_499179.1| abnormal cell LINeage family member (lin-52) [Caenorhabditis elegans] gb|AAP85302.1| LIN-52 [Caenorhabditis elegans] sp|Q10120|LIN52_CAEEL Protein lin-52 (Abnormal cell lineage protein 52) 2.0E-88
blast CAA80188 Hypothetical protein ZK632.13 [Caenorhabditis elegans] ref|NP_499179.1| abnormal cell LINeage family member (lin-52) [Caenorhabditis elegans] gb|AAP85302.1| LIN-52 [Caenorhabditis elegans] sp|Q10120|LIN52_CAEEL Protein lin-52 (Abnormal cell lineage protein 52) 6.0E-88
blast CAE65119 Hypothetical protein CBG09984 [Caenorhabditis briggsae] 1.0E-55
blast CAE65119 Hypothetical protein CBG09984 [Caenorhabditis briggsae] 6.0E-55
blast A88567 protein ZK632.9 [imported] - Caenorhabditis elegans 6.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 4.0E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031483 2 4-23,28-50
Sequence
Target Sequence 
>C. ELEGANS:194173_S_AT
acaagaatatttcgtttctcaaggagatgctgtgantgttaatacaatggagccactgcc
cagccngacgatatcgccaagctcatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnncgccagtgccgacgtggaaagttgctcaacgtgctgaaacccactgg
ctcggcttctccgagatatttgcagccaacaccacc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGAATATTTCGTTTCTCAAGGA 506 111 47 Antisense
CGCCAGTGCCGACGTGGAAAGTTGC 341 257 180 Antisense
GTGCCGACGTGGAAAGTTGCTCAAC 230 479 185 Antisense
GACGTGGAAAGTTGCTCAACGTGCT 650 377 190 Antisense
AAGTTGCTCAACGTGCTGAAACCCA 220 155 198 Antisense
TTGCTCAACGTGCTGAAACCCACTG 417 671 201 Antisense
ACTGGCTCGGCTTCTCCGAGATATT 360 97 222 Antisense
GGCTCGGCTTCTCCGAGATATTTGC 509 539 225 Antisense
TCGGCTTCTCCGAGATATTTGCAGC 495 605 228 Antisense
CTTCTCCGAGATATTTGCAGCCAAC 231 221 232 Antisense
CGAGATATTTGCAGCCAACACCACC 178 251 238 Antisense
Sequence Source Affymetrix Proprietary Database